Sequence Similarity Clusters for the Entities in PDB 1Y1W

Entity #1 | Chains: T
5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 62 405
95 % 44 62 596
90 % 44 62 629
70 % 44 62 672
50 % 45 73 583
40 % 45 73 616
30 % 45 73 628
Entity #11 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 124 175
95 % 88 125 237
90 % 88 125 247
70 % 88 125 279
50 % 88 125 317
40 % 88 125 338
30 % 88 136 316
Entity #12 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 114 205
95 % 84 114 290
90 % 84 114 304
70 % 84 114 328
50 % 84 115 351
40 % 84 115 384
30 % 84 118 378
Entity #13 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 124 176
95 % 88 124 242
90 % 88 124 251
70 % 88 134 256
50 % 93 142 252
40 % 93 142 273
30 % 93 142 290
Entity #14 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 115 203
95 % 84 115 289
90 % 84 115 302
70 % 84 115 326
50 % 84 115 357
40 % 84 116 380
30 % 84 116 383
Entity #15 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 120 183
95 % 86 120 253
90 % 86 120 261
70 % 86 120 298
50 % 86 120 327
40 % 86 120 353
30 % 86 120 360
Entity #2 | Chains: N
5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 113 206
95 % 84 113 291
90 % 84 113 305
70 % 84 113 329
50 % 84 123 328
40 % 84 123 355
30 % 84 123 363
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 114 204
95 % 84 115 286
90 % 84 115 298
70 % 84 115 322
50 % 84 125 323
40 % 89 133 309
30 % 89 136 313
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 110 209
95 % 82 110 301
90 % 82 110 316
70 % 82 110 337
50 % 82 111 364
40 % 82 111 397
30 % 82 111 398
Entity #7 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 59 454
95 % 42 59 668
90 % 42 59 713
70 % 42 60 734
50 % 43 62 767
40 % 43 62 803
30 % 43 62 802
Entity #8 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 125 171
95 % 89 125 236
90 % 89 125 246
70 % 89 125 277
50 % 89 126 309
40 % 89 135 303
30 % 89 135 321
Entity #9 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 119 188
95 % 86 119 254
90 % 86 119 262
70 % 86 119 299
50 % 86 130 295
40 % 86 130 318
30 % 86 130 332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.