Sequence Similarity Clusters for the Entities in PDB 1Y1W

Entity #1 | Chains: T
5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 63 445
95 % 44 63 635
90 % 44 63 671
70 % 44 63 711
50 % 45 74 584
40 % 45 74 621
30 % 45 74 630
Entity #11 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 128 173
95 % 88 129 236
90 % 88 129 245
70 % 88 129 277
50 % 88 129 312
40 % 88 129 333
30 % 88 140 311
Entity #12 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 115 207
95 % 84 115 295
90 % 84 115 307
70 % 84 115 335
50 % 84 116 365
40 % 84 116 401
30 % 84 119 386
Entity #13 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 128 174
95 % 88 128 239
90 % 88 128 249
70 % 88 138 263
50 % 93 146 259
40 % 93 146 279
30 % 93 146 289
Entity #14 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 116 204
95 % 84 116 291
90 % 84 116 303
70 % 84 116 330
50 % 84 116 369
40 % 84 117 393
30 % 84 117 393
Entity #15 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 124 180
95 % 86 124 249
90 % 86 124 256
70 % 86 124 292
50 % 86 124 323
40 % 86 124 345
30 % 86 124 352
Entity #2 | Chains: N
5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 114 209
95 % 84 114 296
90 % 84 114 308
70 % 84 114 336
50 % 84 124 332
40 % 84 124 359
30 % 84 124 366
Entity #5 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 115 205
95 % 84 116 286
90 % 84 116 297
70 % 84 116 326
50 % 84 126 328
40 % 89 134 317
30 % 89 137 321
Entity #6 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 111 211
95 % 82 111 305
90 % 82 111 318
70 % 82 111 344
50 % 82 112 388
40 % 82 112 427
30 % 82 112 419
Entity #7 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 60 493
95 % 42 60 697
90 % 42 60 728
70 % 42 61 753
50 % 43 63 771
40 % 43 63 801
30 % 43 63 802
Entity #8 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 129 170
95 % 89 129 233
90 % 89 129 242
70 % 89 129 275
50 % 89 130 304
40 % 89 139 306
30 % 89 139 315
Entity #9 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 123 182
95 % 86 123 254
90 % 86 123 262
70 % 86 123 297
50 % 86 134 297
40 % 86 134 320
30 % 86 134 332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.