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An Information Portal to 109822 Biological Macromolecular Structures

Complete RNA Polymerase II elongation complex
Sequence Clustering and Redundancy Reduction Results
1Y1W
Sequence Clusters for the Sequence Entities in PDB 1Y1W
Entity #1: Chains: T - 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 53 431
95% 38 53 628
90% 38 53 658
70% 38 53 709
50% 39 55 704
40% 39 55 736
30% 39 55 737
Entity #11: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 107 187
95% 79 108 261
90% 79 108 275
70% 79 108 294
50% 79 108 321
40% 79 108 354
30% 79 110 348
Entity #12: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 102 205
95% 75 102 289
90% 75 102 307
70% 75 102 325
50% 75 103 349
40% 75 103 377
30% 75 103 381
Entity #13: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 107 188
95% 79 107 268
90% 79 107 281
70% 79 108 291
50% 84 116 276
40% 84 116 308
30% 84 116 321
Entity #14: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 103 201
95% 75 103 286
90% 75 103 302
70% 75 103 320
50% 75 103 355
40% 75 104 374
30% 75 104 378
Entity #15: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 106 190
95% 79 106 270
90% 79 106 284
70% 79 106 302
50% 79 106 331
40% 79 106 362
30% 79 106 368
Entity #2: Chains: N - 5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: P - 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 101 206
95% 75 101 290
90% 75 101 308
70% 75 101 327
50% 75 102 351
40% 75 102 379
30% 75 102 383
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 102 203
95% 75 103 283
90% 75 103 297
70% 75 103 317
50% 75 104 343
40% 80 112 323
30% 80 112 330
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 101 207
95% 75 101 291
90% 75 101 309
70% 75 101 328
50% 75 102 353
40% 75 102 382
30% 75 102 387
Entity #7: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 51 456
95% 36 51 663
90% 36 51 695
70% 36 52 743
50% 36 52 833
40% 36 52 854
30% 36 52 857
Entity #8: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 108 186
95% 80 108 260
90% 80 108 274
70% 80 108 293
50% 80 109 312
40% 80 109 341
30% 80 109 350
Entity #9: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 105 194
95% 79 105 278
90% 79 105 290
70% 79 105 309
50% 79 107 320
40% 79 107 353
30% 79 107 357
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.