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Complete RNA Polymerase II elongation complex
Sequence Clustering and Redundancy Reduction Results
1Y1W
Sequence Clusters for the Sequence Entities in PDB 1Y1W
Entity #1: Chains: T - 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 53 441
95% 38 53 642
90% 38 53 674
70% 38 53 727
50% 39 55 720
40% 39 55 748
30% 39 55 746
Entity #11: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 109 188
95% 81 110 258
90% 81 110 271
70% 81 110 295
50% 81 110 320
40% 81 110 351
30% 81 112 351
Entity #12: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 104 205
95% 77 104 288
90% 77 104 302
70% 77 104 324
50% 77 105 345
40% 77 105 377
30% 77 105 382
Entity #13: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 109 189
95% 81 109 263
90% 81 109 276
70% 81 110 292
50% 86 118 276
40% 86 118 312
30% 86 118 321
Entity #14: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 105 201
95% 77 105 286
90% 77 105 297
70% 77 105 320
50% 77 105 352
40% 77 106 370
30% 77 106 376
Entity #15: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 108 192
95% 81 108 266
90% 81 108 280
70% 81 108 301
50% 81 108 329
40% 81 108 363
30% 81 108 366
Entity #2: Chains: N - 5'-D(*AP*AP*GP*TP*AP*CP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: P - 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 103 206
95% 77 103 289
90% 77 103 303
70% 77 103 325
50% 77 104 348
40% 77 104 379
30% 77 104 384
Entity #5: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 104 203
95% 77 105 285
90% 77 105 296
70% 77 105 319
50% 77 106 337
40% 82 114 321
30% 82 114 330
Entity #6: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 103 207
95% 77 103 290
90% 77 103 304
70% 77 103 326
50% 77 104 350
40% 77 104 381
30% 77 104 387
Entity #7: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 51 468
95% 36 51 676
90% 36 51 712
70% 36 52 757
50% 36 52 848
40% 36 52 869
30% 36 52 869
Entity #8: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 110 184
95% 82 110 257
90% 82 110 270
70% 82 110 294
50% 82 111 313
40% 82 111 346
30% 82 111 354
Entity #9: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 107 193
95% 81 107 272
90% 81 107 285
70% 81 107 306
50% 81 109 319
40% 81 109 350
30% 81 109 359
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.