Sequence Similarity Clusters for the Entities in PDB 1Y1V

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 113 206
95 % 93 113 289
90 % 93 113 303
70 % 93 113 327
50 % 93 123 327
40 % 93 123 353
30 % 93 123 362
Entity #10 | Chains: J
DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 124 176
95 % 98 124 241
90 % 98 124 251
70 % 98 134 254
50 % 103 142 252
40 % 103 142 273
30 % 103 142 289
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 115 203
95 % 93 115 286
90 % 93 115 300
70 % 93 115 324
50 % 93 115 355
40 % 93 116 377
30 % 93 116 383
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 120 181
95 % 96 120 251
90 % 96 120 260
70 % 96 120 296
50 % 96 120 325
40 % 96 120 351
30 % 96 120 359
Entity #13 | Chains: S
Transcription elongation factor S-II protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25185
95 % 3 5 13003
90 % 3 5 12758
70 % 3 5 11998
50 % 3 5 10742
40 % 3 5 9771
30 % 3 5 8501
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 114 204
95 % 93 115 282
90 % 93 115 296
70 % 93 115 320
50 % 93 125 321
40 % 98 133 307
30 % 98 136 311
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 110 209
95 % 91 110 301
90 % 91 110 316
70 % 91 110 336
50 % 91 111 362
40 % 91 111 394
30 % 91 111 397
Entity #4 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 59 453
95 % 47 59 661
90 % 47 59 706
70 % 47 60 722
50 % 48 62 756
40 % 48 62 791
30 % 48 62 794
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 125 171
95 % 99 125 235
90 % 99 125 246
70 % 99 125 277
50 % 99 126 308
40 % 99 135 301
30 % 99 135 318
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 119 186
95 % 96 119 252
90 % 96 119 262
70 % 96 119 299
50 % 96 130 294
40 % 96 130 318
30 % 96 130 332
Entity #7 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 62 404
95 % 49 62 593
90 % 49 62 626
70 % 49 62 665
50 % 50 73 580
40 % 50 73 610
30 % 50 73 621
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 124 175
95 % 98 125 236
90 % 98 125 247
70 % 98 125 279
50 % 98 125 316
40 % 98 125 336
30 % 98 136 314
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 114 205
95 % 92 114 288
90 % 92 114 302
70 % 92 114 326
50 % 92 115 348
40 % 92 115 381
30 % 92 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.