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Refined RNA Polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1Y1V
Sequence Clusters for the Sequence Entities in PDB 1Y1V
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 96 208
95% 82 96 292
90% 82 96 309
70% 82 96 326
50% 82 97 351
40% 82 97 376
30% 82 97 387
Entity #10: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 102 190
95% 86 102 269
90% 86 102 281
70% 86 103 295
50% 91 111 276
40% 91 111 305
30% 91 111 318
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 98 204
95% 82 98 287
90% 82 98 304
70% 82 98 319
50% 82 98 360
40% 82 99 372
30% 82 99 381
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 101 192
95% 86 101 274
90% 86 101 287
70% 86 101 304
50% 86 101 341
40% 86 101 366
30% 86 101 376
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32423
95% 3 4 14536
90% 3 4 14184
70% 3 4 13209
50% 3 4 11593
40% 3 4 10383
30% 3 4 8957
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 97 205
95% 82 98 284
90% 82 98 300
70% 82 98 317
50% 82 99 344
40% 87 107 316
30% 87 107 328
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 96 210
95% 82 96 294
90% 82 96 311
70% 82 96 327
50% 82 97 354
40% 82 97 379
30% 82 97 389
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 49 464
95% 41 49 660
90% 41 49 695
70% 41 50 736
50% 41 50 821
40% 41 50 840
30% 41 50 842
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 103 184
95% 87 103 263
90% 87 103 275
70% 87 103 298
50% 87 104 322
40% 87 104 346
30% 87 104 355
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 100 194
95% 86 100 278
90% 86 100 291
70% 86 100 310
50% 86 102 332
40% 86 102 356
30% 86 102 368
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 51 422
95% 43 51 615
90% 43 51 648
70% 43 51 698
50% 44 53 683
40% 44 53 715
30% 44 53 714
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 102 187
95% 86 103 265
90% 86 103 277
70% 86 103 299
50% 86 103 333
40% 86 103 357
30% 86 105 350
Entity #9: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 97 206
95% 81 97 290
90% 81 97 307
70% 81 97 323
50% 81 98 350
40% 81 98 375
30% 81 98 386
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.