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Refined RNA Polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1Y1V
Sequence Clusters for the Sequence Entities in PDB 1Y1V
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 96 203
95% 82 96 287
90% 82 96 300
70% 82 96 316
50% 82 97 338
40% 82 97 361
30% 82 97 374
Entity #10: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 102 181
95% 86 102 259
90% 86 102 270
70% 86 103 280
50% 86 103 311
40% 90 111 294
30% 90 111 311
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 98 200
95% 82 98 282
90% 82 98 295
70% 82 98 311
50% 82 98 347
40% 82 99 356
30% 82 99 367
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 101 186
95% 86 101 267
90% 86 101 278
70% 86 101 295
50% 86 101 327
40% 86 101 351
30% 86 101 362
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31619
95% 3 4 14210
90% 3 4 13874
70% 3 4 12935
50% 3 4 11351
40% 3 4 10164
30% 3 4 8779
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 97 201
95% 82 98 279
90% 82 98 292
70% 82 98 309
50% 82 99 331
40% 86 107 301
30% 86 107 319
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 96 205
95% 82 96 288
90% 82 96 301
70% 82 96 318
50% 82 97 341
40% 82 97 363
30% 82 97 376
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 49 444
95% 41 49 642
90% 41 49 675
70% 41 50 698
50% 41 50 757
40% 41 50 769
30% 41 50 776
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 103 176
95% 87 103 250
90% 87 103 261
70% 87 103 287
50% 87 104 301
40% 87 104 328
30% 87 104 339
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 100 188
95% 86 100 271
90% 86 100 282
70% 86 100 301
50% 86 102 316
40% 86 102 339
30% 86 102 350
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 51 413
95% 43 51 605
90% 43 51 636
70% 43 51 667
50% 44 53 638
40% 44 53 664
30% 44 53 664
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 102 180
95% 86 103 251
90% 86 103 263
70% 86 103 288
50% 86 103 317
40% 86 103 340
30% 86 105 336
Entity #9: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 97 202
95% 81 97 286
90% 81 97 299
70% 81 97 315
50% 81 98 335
40% 81 98 358
30% 81 98 371
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.