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Refined RNA Polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1Y1V
Sequence Clusters for the Sequence Entities in PDB 1Y1V
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 96 209
95% 82 96 295
90% 82 96 313
70% 82 96 329
50% 82 97 358
40% 82 97 379
30% 82 97 389
Entity #10: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 102 191
95% 86 102 269
90% 86 102 284
70% 86 103 295
50% 91 111 278
40% 91 111 306
30% 91 111 322
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 98 205
95% 82 98 290
90% 82 98 308
70% 82 98 323
50% 82 98 364
40% 82 99 373
30% 82 99 383
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 101 193
95% 86 101 275
90% 86 101 289
70% 86 101 306
50% 86 101 344
40% 86 101 367
30% 86 101 378
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32750
95% 3 4 14678
90% 3 4 14324
70% 3 4 13340
50% 3 4 11699
40% 3 4 10475
30% 3 4 9025
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 97 206
95% 82 98 287
90% 82 98 305
70% 82 98 321
50% 82 99 349
40% 87 107 316
30% 87 107 330
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 96 211
95% 82 96 297
90% 82 96 315
70% 82 96 330
50% 82 97 361
40% 82 97 382
30% 82 97 392
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 49 465
95% 41 49 668
90% 41 49 703
70% 41 50 742
50% 41 50 825
40% 41 50 851
30% 41 50 850
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 103 186
95% 87 103 263
90% 87 103 276
70% 87 103 298
50% 87 104 325
40% 87 104 348
30% 87 104 356
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 100 195
95% 86 100 280
90% 86 100 294
70% 86 100 313
50% 86 102 335
40% 86 102 360
30% 86 102 370
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 51 423
95% 43 51 619
90% 43 51 653
70% 43 51 710
50% 44 53 694
40% 44 53 718
30% 44 53 715
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 102 189
95% 86 103 265
90% 86 103 278
70% 86 103 299
50% 86 103 336
40% 86 103 361
30% 86 105 351
Entity #9: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 97 207
95% 81 97 293
90% 81 97 311
70% 81 97 326
50% 81 98 357
40% 81 98 378
30% 81 98 388
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.