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Refined RNA Polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1Y1V
Sequence Clusters for the Sequence Entities in PDB 1Y1V
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 101 208
95% 84 101 292
90% 84 101 310
70% 84 101 329
50% 84 102 352
40% 84 102 381
30% 84 102 387
Entity #10: Chains: J - DNA-directed RNA polymerases I/II/III subunit 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 107 189
95% 88 107 269
90% 88 107 282
70% 88 108 293
50% 93 116 277
40% 93 116 310
30% 93 116 322
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 103 202
95% 84 103 287
90% 84 103 303
70% 84 103 321
50% 84 103 356
40% 84 104 376
30% 84 104 382
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 106 192
95% 88 106 271
90% 88 106 285
70% 88 106 303
50% 88 106 332
40% 88 106 365
30% 88 106 371
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 34052
95% 3 4 15164
90% 3 4 14804
70% 3 4 13810
50% 3 4 12104
40% 3 4 10840
30% 3 4 9325
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 102 205
95% 84 103 284
90% 84 103 298
70% 84 103 318
50% 84 104 345
40% 89 112 324
30% 89 112 332
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 101 209
95% 84 101 293
90% 84 101 311
70% 84 101 330
50% 84 102 354
40% 84 102 384
30% 84 102 390
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 51 457
95% 41 51 664
90% 41 51 696
70% 41 52 744
50% 41 52 834
40% 41 52 856
30% 41 52 859
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 108 187
95% 89 108 262
90% 89 108 276
70% 89 108 296
50% 89 109 314
40% 89 109 344
30% 89 109 353
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 105 196
95% 88 105 279
90% 88 105 291
70% 88 105 310
50% 88 107 324
40% 88 107 357
30% 88 107 360
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 53 432
95% 43 53 630
90% 43 53 660
70% 43 53 711
50% 44 55 708
40% 44 55 738
30% 44 55 739
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 107 188
95% 88 108 263
90% 88 108 277
70% 88 108 297
50% 88 108 325
40% 88 108 358
30% 88 110 350
Entity #9: Chains: I - DNA-directed RNA polymerase II subunit 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 102 207
95% 83 102 291
90% 83 102 309
70% 83 102 327
50% 83 103 350
40% 83 103 379
30% 83 103 385
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.