Sequence Similarity Clusters for the Entities in PDB 1Y1D

Entity #1 | Chains: A,B
Transthyretin protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 163 49
95 % 144 282 11 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 144 282 12
70 % 144 288 15
50 % 146 292 20
40 % 146 292 29
30 % 148 304 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.