Sequence Similarity Clusters for the Entities in PDB 1Y1D

Entity #1 | Chains: A,B
Transthyretin protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 175 48
95 % 150 295 10 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 150 295 12
70 % 150 301 15
50 % 152 305 22
40 % 152 305 35
30 % 154 317 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures