Sequence Similarity Clusters for the Entities in PDB 1Y14

Entity #1 | Chains: A,C
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41376
95 % 1 1 31377 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 30031
70 % 1 1 26909
50 % 1 1 23005
40 % 1 1 20241
30 % 1 1 17144
Entity #2 | Chains: B,D
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 64 514
95 % 1 64 706 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 1 64 735
70 % 1 64 788
50 % 1 81 571
40 % 1 81 611
30 % 1 81 606

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.