Sequence Similarity Clusters for the Entities in PDB 1Y14

Entity #1 | Chains: A,C
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42493
95 % 1 1 32229 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 30811
70 % 1 1 27501
50 % 1 1 23471
40 % 1 1 20648
30 % 1 1 17487
Entity #2 | Chains: B,D
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 67 493
95 % 1 67 685 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.7
PDBFlex
90 % 1 67 715
70 % 1 67 760
50 % 1 85 564
40 % 1 85 600
30 % 1 85 591

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures