Sequence Similarity Clusters for the Entities in PDB 1Y14

Entity #1 | Chains: A,C
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34593
95 % 1 1 29799 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 28592
70 % 1 1 25682
50 % 1 1 22024
40 % 1 1 19428
30 % 1 1 16267
Entity #2 | Chains: B,D
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 73 558
95 % 1 73 687 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 1 73 709
70 % 1 73 759
50 % 1 101 521
40 % 1 101 568
30 % 1 101 572

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures