Sequence Similarity Clusters for the Entities in PDB 1Y14

Entity #1 | Chains: A,C
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41961
95 % 1 1 31829
90 % 1 1 30448
70 % 1 1 27217
50 % 1 1 23230
40 % 1 1 20441
30 % 1 1 17315
Entity #2 | Chains: B,D
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 64 525
95 % 1 64 717 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 1 64 747
70 % 1 64 798
50 % 1 82 570
40 % 1 82 607
30 % 1 82 597

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.