Sequence Similarity Clusters for the Entities in PDB 1Y14

Entity #1 | Chains: A,C
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34135
95 % 1 1 29429 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 28248
70 % 1 1 25386
50 % 1 1 21776
40 % 1 1 19210
30 % 1 1 16100
Entity #2 | Chains: B,D
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 72 551
95 % 1 72 686 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 1 72 708
70 % 1 72 754
50 % 1 100 519
40 % 1 100 563
30 % 1 100 573

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures