Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 269 32
95 % 152 269 42
90 % 153 273 41
70 % 153 273 51
50 % 183 385 28
40 % 184 387 38
30 % 207 482 28
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 91 200
95 % 152 269 47
90 % 152 269 50
70 % 152 269 59
50 % 180 379 36
40 % 180 379 45
30 % 201 472 37
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 267 37
95 % 152 268 50
90 % 152 268 53
70 % 152 268 64
50 % 186 385 26
40 % 186 385 37
30 % 207 475 29
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 269 35
95 % 152 269 46
90 % 152 269 49
70 % 152 269 58
50 % 180 379 35
40 % 203 469 19
30 % 203 470 33
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 217 47
95 % 152 276 35
90 % 152 276 39
70 % 180 390 21
50 % 180 391 25
40 % 180 391 36
30 % 180 391 55
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 270 33
95 % 152 270 43
90 % 152 270 47
70 % 152 270 56
50 % 183 384 31
40 % 183 384 43
30 % 204 476 35
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 268 36
95 % 152 268 51
90 % 152 268 54
70 % 152 269 61
50 % 152 269 87
40 % 152 269 107
30 % 152 269 117
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 272 28
95 % 156 277 34
90 % 156 277 38
70 % 156 277 49
50 % 187 392 23
40 % 187 393 35
30 % 187 393 53
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 264 38
95 % 152 269 48
90 % 152 269 51
70 % 152 269 60
50 % 152 269 86
40 % 152 270 106
30 % 183 382 62
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 87 231
95 % 151 263 52
90 % 152 267 55
70 % 152 267 65
50 % 152 267 90
40 % 152 267 109
30 % 152 267 119
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 635
95 % 136 234 62
90 % 136 234 66
70 % 136 234 77
50 % 136 234 103
40 % 136 234 129
30 % 136 234 139
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 272 27
95 % 153 272 39
90 % 153 272 44
70 % 153 272 53
50 % 181 382 30
40 % 181 382 41
30 % 181 382 59
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 217 48
95 % 152 268 49
90 % 152 268 52
70 % 152 268 63
50 % 152 268 89
40 % 152 268 108
30 % 152 268 118
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 259 41
95 % 152 259 54
90 % 152 259 58
70 % 152 259 68
50 % 152 259 93
40 % 152 259 115
30 % 152 259 128
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 269 31
95 % 152 270 40
90 % 152 270 45
70 % 152 270 54
50 % 180 378 34
40 % 180 379 44
30 % 180 379 61
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 233 44
95 % 136 233 63
90 % 136 233 67
70 % 136 233 78
50 % 142 293 78
40 % 142 293 96
30 % 142 293 113
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 262 39
95 % 152 270 41
90 % 152 270 46
70 % 152 270 55
50 % 180 379 32
40 % 180 380 42
30 % 180 380 60
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 269 34
95 % 152 269 45
90 % 152 269 48
70 % 152 269 57
50 % 181 383 29
40 % 181 383 40
30 % 181 385 58
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 274 24
95 % 160 280 32
90 % 160 280 37
70 % 160 280 48
50 % 160 280 83
40 % 160 280 102
30 % 184 332 78
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 273 26
95 % 153 274 36
90 % 153 274 40
70 % 153 274 50
50 % 180 332 59
40 % 180 333 72
30 % 180 333 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.