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Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNR
Sequence Clusters for the Sequence Entities in PDB 1XNR
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 16S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 255 23
95% 117 255 41
90% 118 259 40
70% 118 259 52
50% 159 369 36
40% 160 371 48
30% 163 408 50
Entity #11: Chains: I - 16S Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 113 133
95% 117 255 45
90% 117 255 48
70% 117 255 60
50% 156 363 41
40% 156 363 56
30% 158 399 58
Entity #12: Chains: J - 16S Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 252 29
95% 117 254 48
90% 117 254 51
70% 117 254 63
50% 162 369 34
40% 162 369 47
30% 162 374 66
Entity #13: Chains: K - 16S Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 255 27
95% 117 255 44
90% 117 255 47
70% 117 255 59
50% 156 363 42
40% 160 403 39
30% 160 403 53
Entity #14: Chains: L - 16S Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 224 37
95% 117 262 36
90% 117 262 38
70% 156 375 24
50% 156 375 33
40% 156 375 46
30% 156 375 71
Entity #15: Chains: M - 16S Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 256 24
95% 117 256 42
90% 117 256 45
70% 117 256 57
50% 156 365 39
40% 156 365 53
30% 158 401 55
Entity #16: Chains: N - 16S Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 254 28
95% 117 254 49
90% 117 254 52
70% 117 254 64
50% 117 254 97
40% 117 254 122
30% 117 254 144
Entity #17: Chains: O - 16S Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 258 21
95% 121 263 35
90% 121 263 37
70% 121 263 48
50% 163 376 32
40% 163 376 44
30% 163 376 69
Entity #18: Chains: P - 16S Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 250 30
95% 117 255 46
90% 117 255 49
70% 117 255 61
50% 117 255 95
40% 117 255 120
30% 156 363 78
Entity #19: Chains: Q - 16S Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 92 218
95% 116 249 51
90% 117 253 53
70% 117 253 65
50% 117 253 98
40% 117 253 124
30% 117 253 146
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 16S Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 49 460
95% 111 221 64
90% 111 221 68
70% 111 221 81
50% 111 221 116
40% 111 221 144
30% 111 221 166
Entity #21: Chains: S - 16S Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 223 38
95% 111 223 63
90% 111 223 67
70% 111 223 80
50% 157 366 38
40% 157 366 52
30% 157 366 74
Entity #22: Chains: T - 16S Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 193 43
95% 117 254 47
90% 117 254 50
70% 117 254 62
50% 117 254 96
40% 117 254 121
30% 117 254 143
Entity #23: Chains: V - 16S Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 238 34
95% 117 238 55
90% 117 238 59
70% 117 238 71
50% 117 238 110
40% 117 238 133
30% 117 238 153
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 16S Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 255 25
95% 117 256 39
90% 117 256 43
70% 117 256 55
50% 117 256 94
40% 156 363 55
30% 156 363 77
Entity #5: Chains: C - 16S Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 219 39
95% 110 219 66
90% 110 219 70
70% 110 219 83
50% 125 282 81
40% 125 282 101
30% 125 282 123
Entity #6: Chains: D - 16S Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 248 32
95% 117 256 40
90% 117 256 44
70% 117 256 56
50% 156 363 40
40% 156 364 54
30% 156 364 75
Entity #7: Chains: E - 16S Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 255 26
95% 117 255 43
90% 117 255 46
70% 117 255 58
50% 157 367 37
40% 157 367 51
30% 157 369 72
Entity #8: Chains: F - 16S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 260 18
95% 125 266 34
90% 125 266 36
70% 125 266 47
50% 125 266 88
40% 125 266 110
30% 151 313 94
Entity #9: Chains: G - 16S Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 259 20
95% 118 260 37
90% 118 260 39
70% 118 260 50
50% 144 308 57
40% 144 309 73
30% 144 309 97
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.