Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 239 19
95 % 137 239 31
90 % 138 243 30
70 % 138 243 41
50 % 161 330 31
40 % 162 332 41
30 % 180 401 37
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 90 190
95 % 137 239 35
90 % 137 239 40
70 % 137 239 49
50 % 158 324 39
40 % 158 324 49
30 % 175 392 47
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 237 25
95 % 137 238 38
90 % 137 238 43
70 % 137 238 53
50 % 164 330 30
40 % 164 330 40
30 % 181 396 41
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 239 23
95 % 137 239 34
90 % 137 239 39
70 % 137 239 48
50 % 158 324 38
40 % 177 397 27
30 % 177 398 39
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 194 42
95 % 137 246 22
90 % 137 246 27
70 % 158 335 23
50 % 158 336 29
40 % 158 336 39
30 % 158 336 56
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 240 20
95 % 137 240 32
90 % 137 240 37
70 % 137 240 46
50 % 161 329 35
40 % 161 329 46
30 % 178 397 46
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 238 24
95 % 137 238 39
90 % 137 238 44
70 % 137 239 51
50 % 137 239 82
40 % 137 239 108
30 % 137 239 124
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 242 16
95 % 141 247 21
90 % 141 247 26
70 % 141 247 37
50 % 165 337 27
40 % 165 338 38
30 % 165 338 54
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 234 26
95 % 137 239 36
90 % 137 239 41
70 % 137 239 50
50 % 137 239 81
40 % 137 240 106
30 % 161 327 65
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 84 225
95 % 136 233 40
90 % 137 237 45
70 % 137 237 54
50 % 137 237 87
40 % 137 237 113
30 % 137 237 128
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 49 566
95 % 122 205 63
90 % 122 205 66
70 % 122 205 75
50 % 122 205 109
40 % 122 205 129
30 % 122 205 145
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 242 15
95 % 138 242 26
90 % 138 242 31
70 % 138 242 42
50 % 159 327 34
40 % 159 327 44
30 % 159 327 60
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 188 48
95 % 137 238 37
90 % 137 238 42
70 % 137 238 52
50 % 137 238 83
40 % 137 238 110
30 % 137 238 126
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 229 39
95 % 137 229 54
90 % 137 229 58
70 % 137 229 69
50 % 137 229 97
40 % 137 229 118
30 % 137 229 133
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 239 17
95 % 137 240 27
90 % 137 240 33
70 % 137 240 43
50 % 158 323 37
40 % 158 324 47
30 % 158 324 63
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 204 43
95 % 122 204 64
90 % 122 204 67
70 % 122 204 76
50 % 128 252 68
40 % 128 252 93
30 % 128 252 110
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 232 27
95 % 137 240 28
90 % 137 240 34
70 % 137 240 44
50 % 158 324 36
40 % 158 325 45
30 % 158 325 62
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 239 22
95 % 137 239 33
90 % 137 239 38
70 % 137 239 47
50 % 159 328 33
40 % 159 328 43
30 % 159 330 59
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 244 13
95 % 145 250 20
90 % 145 250 25
70 % 145 250 35
50 % 145 250 70
40 % 145 250 94
30 % 162 289 80
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 243 14
95 % 138 244 25
90 % 138 244 29
70 % 138 244 40
50 % 158 289 50
40 % 158 290 62
30 % 158 290 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.