Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 270 32
95 % 153 270 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 154 274 47
70 % 154 274 57
50 % 184 419 27
40 % 185 425 37
30 % 210 538 30
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 91 214
95 % 153 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 153 270 55
70 % 153 270 65
50 % 181 410 35
40 % 181 410 48
30 % 204 520 35
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 268 39
95 % 153 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 153 269 58
70 % 153 269 68
50 % 187 419 26
40 % 187 419 38
30 % 210 525 31
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 270 35
95 % 153 270 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 153 270 54
70 % 153 270 64
50 % 181 413 32
40 % 206 525 19
30 % 206 525 32
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 217 51
95 % 153 277 40 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 153 277 45
70 % 181 420 19
50 % 181 430 24
40 % 181 430 36
30 % 181 430 55
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 271 33
95 % 153 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 153 271 52
70 % 153 271 62
50 % 184 417 31
40 % 184 417 46
30 % 207 523 34
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 269 38
95 % 153 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 153 269 59
70 % 153 277 55
50 % 153 277 91
40 % 153 277 115
30 % 153 277 123
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 273 30
95 % 157 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 157 278 43
70 % 157 278 53
50 % 188 426 25
40 % 188 431 35
30 % 188 431 54
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 265 41
95 % 153 270 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 153 270 56
70 % 153 270 66
50 % 153 277 90
40 % 153 277 114
30 % 184 412 63
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 87 253
95 % 152 264 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 153 268 60
70 % 153 268 69
50 % 153 268 94
40 % 153 268 118
30 % 153 268 128
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 51 715
95 % 137 235 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 137 235 70
70 % 137 235 82
50 % 137 235 111
40 % 137 235 135
30 % 137 235 143
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 273 29
95 % 154 273 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 154 273 48
70 % 154 273 59
50 % 182 419 28
40 % 182 422 40
30 % 182 422 56
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 137 218 50
95 % 153 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 153 269 57
70 % 153 269 67
50 % 153 269 93
40 % 153 269 116
30 % 153 269 127
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 260 43
95 % 153 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 153 260 63
70 % 153 260 74
50 % 153 260 98
40 % 153 260 121
30 % 153 260 133
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 270 31
95 % 153 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 153 271 50
70 % 153 271 60
50 % 181 408 36
40 % 181 413 45
30 % 181 413 62
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 137 234 48
95 % 137 234 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 137 234 71
70 % 137 234 83
50 % 143 308 84
40 % 143 308 103
30 % 143 308 116
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 263 42
95 % 153 271 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 153 271 51
70 % 153 271 61
50 % 181 414 30
40 % 181 419 41
30 % 181 419 57
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 270 34
95 % 153 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 153 270 53
70 % 153 270 63
50 % 182 416 29
40 % 182 416 42
30 % 182 418 61
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 275 27
95 % 161 281 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 161 281 42
70 % 161 281 51
50 % 161 281 88
40 % 161 281 110
30 % 185 353 93
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 274 28
95 % 154 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 154 275 46
70 % 154 275 56
50 % 181 354 68
40 % 181 359 85
30 % 181 359 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.