Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 31
95 % 150 255 42
90 % 151 259 43
70 % 151 259 52
50 % 181 361 29
40 % 182 363 39
30 % 201 440 33
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 91 198
95 % 150 255 46
90 % 150 255 51
70 % 150 255 60
50 % 178 355 36
40 % 178 355 46
30 % 196 431 40
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 253 36
95 % 150 254 49
90 % 150 254 54
70 % 150 254 64
50 % 184 361 28
40 % 184 361 38
30 % 202 434 36
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 34
95 % 150 255 45
90 % 150 255 50
70 % 150 255 59
50 % 178 355 35
40 % 198 436 20
30 % 198 437 34
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 207 47
95 % 150 262 36
90 % 150 262 41
70 % 178 366 21
50 % 178 367 27
40 % 178 367 37
30 % 178 367 57
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 256 32
95 % 150 256 43
90 % 150 256 48
70 % 150 256 57
50 % 181 360 32
40 % 181 360 44
30 % 199 435 39
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 254 35
95 % 150 254 50
90 % 150 254 55
70 % 150 255 62
50 % 150 255 87
40 % 150 255 108
30 % 150 255 120
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 258 29
95 % 154 263 35
90 % 154 263 40
70 % 154 263 50
50 % 185 368 26
40 % 185 369 36
30 % 185 369 56
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 250 37
95 % 150 255 47
90 % 150 255 52
70 % 150 255 61
50 % 150 255 86
40 % 150 256 107
30 % 181 358 62
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 87 224
95 % 149 249 52
90 % 150 253 56
70 % 150 253 65
50 % 150 253 89
40 % 150 253 111
30 % 150 253 124
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 610
95 % 134 220 64
90 % 134 220 69
70 % 134 220 79
50 % 134 220 110
40 % 134 220 132
30 % 134 220 142
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 258 28
95 % 151 258 38
90 % 151 258 44
70 % 151 258 53
50 % 179 358 31
40 % 179 358 41
30 % 179 358 59
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 203 48
95 % 150 254 48
90 % 150 254 53
70 % 150 254 63
50 % 150 254 88
40 % 150 254 109
30 % 150 254 121
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 245 39
95 % 150 245 55
90 % 150 245 60
70 % 150 245 70
50 % 150 245 94
40 % 150 245 118
30 % 150 245 131
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 30
95 % 150 256 40
90 % 150 256 46
70 % 150 256 55
50 % 178 354 34
40 % 178 355 45
30 % 178 355 61
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 219 45
95 % 134 219 65
90 % 134 219 70
70 % 134 219 80
50 % 140 275 80
40 % 140 275 100
30 % 140 275 112
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 248 38
95 % 150 256 41
90 % 150 256 47
70 % 150 256 56
50 % 178 355 33
40 % 178 356 43
30 % 178 356 60
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 33
95 % 150 255 44
90 % 150 255 49
70 % 150 255 58
50 % 179 359 30
40 % 179 359 40
30 % 179 361 58
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 260 25
95 % 158 266 34
90 % 158 266 37
70 % 158 266 46
50 % 158 266 84
40 % 158 266 103
30 % 182 312 79
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 259 27
95 % 151 260 37
90 % 151 260 42
70 % 151 260 51
50 % 178 312 54
40 % 178 313 68
30 % 178 313 88

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.