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An Information Portal to 111558 Biological Macromolecular Structures

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNR
Sequence Clusters for the Sequence Entities in PDB 1XNR
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 16S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 219 31
95% 120 219 44
90% 121 223 45
70% 121 223 56
50% 144 306 35
40% 145 308 43
30% 163 373 37
Entity #11: Chains: I - 16S Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 89 180
95% 120 219 48
90% 120 219 52
70% 120 219 63
50% 141 300 43
40% 141 300 52
30% 158 364 46
Entity #12: Chains: J - 16S Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 217 36
95% 120 218 51
90% 120 218 55
70% 120 218 67
50% 147 306 31
40% 147 306 42
30% 164 368 40
Entity #13: Chains: K - 16S Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 219 34
95% 120 219 47
90% 120 219 51
70% 120 219 62
50% 141 300 42
40% 160 369 30
30% 160 370 38
Entity #14: Chains: L - 16S Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 182 46
95% 120 226 39
90% 120 226 43
70% 141 311 22
50% 141 312 30
40% 141 312 41
30% 141 312 57
Entity #15: Chains: M - 16S Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 220 32
95% 120 220 45
90% 120 220 49
70% 120 220 60
50% 144 305 39
40% 144 305 50
30% 161 369 44
Entity #16: Chains: N - 16S Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 218 35
95% 120 218 52
90% 120 218 56
70% 120 219 65
50% 120 219 92
40% 120 219 114
30% 120 219 128
Entity #17: Chains: O - 16S Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 222 29
95% 124 227 36
90% 124 227 40
70% 124 227 52
50% 148 313 29
40% 148 314 39
30% 148 314 54
Entity #18: Chains: P - 16S Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 214 37
95% 120 219 49
90% 120 219 53
70% 120 219 64
50% 120 219 91
40% 120 220 113
30% 144 303 70
Entity #19: Chains: Q - 16S Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 80 226
95% 119 213 56
90% 120 217 58
70% 120 217 69
50% 120 217 94
40% 120 217 116
30% 120 217 130
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 16S Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 49 530
95% 112 194 64
90% 112 194 66
70% 112 194 79
50% 112 194 113
40% 112 194 131
30% 112 194 150
Entity #21: Chains: S - 16S Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 222 28
95% 121 222 41
90% 121 222 46
70% 121 222 57
50% 142 303 38
40% 142 303 48
30% 142 303 67
Entity #22: Chains: T - 16S Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 169 49
95% 120 218 50
90% 120 218 54
70% 120 218 66
50% 120 218 93
40% 120 218 115
30% 120 218 129
Entity #23: Chains: V - 16S Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 209 40
95% 120 209 59
90% 120 209 62
70% 120 209 73
50% 120 209 100
40% 120 209 123
30% 120 209 135
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 16S Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 219 30
95% 120 220 42
90% 120 220 47
70% 120 220 58
50% 141 299 41
40% 141 300 51
30% 141 300 69
Entity #5: Chains: C - 16S Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 193 45
95% 112 193 65
90% 112 193 67
70% 112 193 80
50% 118 237 77
40% 118 237 102
30% 118 237 121
Entity #6: Chains: D - 16S Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 212 38
95% 120 220 43
90% 120 220 48
70% 120 220 59
50% 141 300 40
40% 141 301 49
30% 141 301 68
Entity #7: Chains: E - 16S Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 219 33
95% 120 219 46
90% 120 219 50
70% 120 219 61
50% 142 304 37
40% 142 304 47
30% 142 306 63
Entity #8: Chains: F - 16S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 224 25
95% 128 230 24
90% 128 230 29
70% 128 230 41
50% 128 230 83
40% 128 230 108
30% 145 269 80
Entity #9: Chains: G - 16S Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 223 27
95% 121 224 40
90% 121 224 44
70% 121 224 55
50% 141 267 51
40% 141 268 64
30% 141 268 83
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.