POP-OUT | CLOSE

An Information Portal to 108263 Biological Macromolecular Structures

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNR
Sequence Clusters for the Sequence Entities in PDB 1XNR
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 16S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 199 21
95% 106 199 37
90% 107 203 35
70% 107 203 45
50% 129 282 36
40% 130 284 46
30% 148 338 44
Entity #11: Chains: I - 16S Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 90 158
95% 106 199 41
90% 106 199 43
70% 106 199 55
50% 126 276 41
40% 126 276 54
30% 143 329 50
Entity #12: Chains: J - 16S Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 197 29
95% 106 198 45
90% 106 198 47
70% 106 198 59
50% 132 282 35
40% 132 282 45
30% 149 333 46
Entity #13: Chains: K - 16S Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 199 25
95% 106 199 40
90% 106 199 42
70% 106 199 54
50% 126 276 42
40% 145 333 35
30% 145 333 45
Entity #14: Chains: L - 16S Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 166 36
95% 106 206 31
90% 106 206 33
70% 126 288 24
50% 126 288 34
40% 126 288 44
30% 126 288 69
Entity #15: Chains: M - 16S Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 200 22
95% 106 200 38
90% 106 200 40
70% 106 200 51
50% 129 281 39
40% 129 281 50
30% 146 334 49
Entity #16: Chains: N - 16S Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 198 26
95% 106 198 46
90% 106 198 48
70% 106 198 60
50% 106 198 92
40% 106 198 114
30% 106 198 138
Entity #17: Chains: O - 16S Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 202 20
95% 110 207 30
90% 110 207 32
70% 110 207 43
50% 133 289 33
40% 133 289 43
30% 133 289 67
Entity #18: Chains: P - 16S Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 194 30
95% 106 199 42
90% 106 199 44
70% 106 199 56
50% 106 199 89
40% 106 199 112
30% 129 279 76
Entity #19: Chains: Q - 16S Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 80 222
95% 105 193 50
90% 106 197 49
70% 106 197 61
50% 106 197 93
40% 106 197 116
30% 106 197 139
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 16S Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 49 508
95% 98 174 71
90% 98 174 75
70% 98 174 89
50% 98 174 130
40% 98 174 148
30% 98 174 164
Entity #21: Chains: S - 16S Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 202 19
95% 107 202 33
90% 107 202 36
70% 107 202 47
50% 127 279 38
40% 127 279 49
30% 127 279 73
Entity #22: Chains: T - 16S Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 149 54
95% 106 198 44
90% 106 198 46
70% 106 198 58
50% 106 198 91
40% 106 198 113
30% 106 198 137
Entity #23: Chains: V - 16S Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 189 32
95% 106 189 52
90% 106 189 55
70% 106 189 67
50% 106 189 112
40% 106 189 135
30% 106 189 153
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 16S Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 199 23
95% 106 200 35
90% 106 200 38
70% 106 200 48
50% 106 200 88
40% 126 276 53
30% 126 276 75
Entity #5: Chains: C - 16S Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 173 48
95% 98 173 72
90% 98 173 76
70% 98 173 91
50% 103 214 76
40% 103 214 102
30% 103 214 122
Entity #6: Chains: D - 16S Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 192 31
95% 106 200 36
90% 106 200 39
70% 106 200 49
50% 126 276 40
40% 126 277 51
30% 126 277 74
Entity #7: Chains: E - 16S Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 199 24
95% 106 199 39
90% 106 199 41
70% 106 199 52
50% 127 280 37
40% 127 280 48
30% 127 282 72
Entity #8: Chains: F - 16S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 204 17
95% 114 210 29
90% 114 210 31
70% 114 210 42
50% 114 210 82
40% 114 210 107
30% 131 248 87
Entity #9: Chains: G - 16S Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 203 18
95% 107 204 32
90% 107 204 34
70% 107 204 44
50% 127 246 54
40% 127 247 71
30% 127 247 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.