Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 254 29
95 % 150 254 40
90 % 151 258 42
70 % 151 258 51
50 % 174 348 29
40 % 175 350 39
30 % 193 423 33
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 91 192
95 % 150 254 44
90 % 150 254 49
70 % 150 254 58
50 % 171 342 37
40 % 171 342 47
30 % 188 414 44
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 252 35
95 % 150 253 47
90 % 150 253 52
70 % 150 253 62
50 % 177 348 28
40 % 177 348 38
30 % 194 418 37
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 254 33
95 % 150 254 43
90 % 150 254 48
70 % 150 254 57
50 % 171 342 36
40 % 190 419 22
30 % 190 420 35
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 206 44
95 % 150 261 35
90 % 150 261 39
70 % 171 353 23
50 % 171 354 27
40 % 171 354 37
30 % 171 354 56
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 30
95 % 150 255 41
90 % 150 255 46
70 % 150 255 55
50 % 174 347 33
40 % 174 347 45
30 % 191 419 42
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 253 34
95 % 150 253 48
90 % 150 253 53
70 % 150 254 60
50 % 150 254 86
40 % 150 254 106
30 % 150 254 118
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 257 27
95 % 154 262 33
90 % 154 262 37
70 % 154 262 48
50 % 178 355 26
40 % 178 356 36
30 % 178 356 55
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 249 36
95 % 150 254 45
90 % 150 254 50
70 % 150 254 59
50 % 150 254 85
40 % 150 255 105
30 % 174 345 62
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 87 221
95 % 149 248 50
90 % 150 252 54
70 % 150 252 63
50 % 150 252 88
40 % 150 252 108
30 % 150 252 120
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 579
95 % 134 219 62
90 % 134 219 66
70 % 134 219 77
50 % 134 219 107
40 % 134 219 128
30 % 134 219 142
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 257 26
95 % 151 257 37
90 % 151 257 43
70 % 151 257 52
50 % 172 345 31
40 % 172 345 42
30 % 172 345 59
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 202 47
95 % 150 253 46
90 % 150 253 51
70 % 150 253 61
50 % 150 253 87
40 % 150 253 107
30 % 150 253 119
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 244 38
95 % 150 244 54
90 % 150 244 57
70 % 150 244 67
50 % 150 244 91
40 % 150 244 113
30 % 150 244 126
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 254 28
95 % 150 255 38
90 % 150 255 44
70 % 150 255 53
50 % 171 341 35
40 % 171 342 46
30 % 171 342 61
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 218 43
95 % 134 218 63
90 % 134 218 67
70 % 134 218 78
50 % 140 269 77
40 % 140 269 97
30 % 140 269 112
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 247 37
95 % 150 255 39
90 % 150 255 45
70 % 150 255 54
50 % 171 342 34
40 % 171 343 44
30 % 171 343 60
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 254 32
95 % 150 254 42
90 % 150 254 47
70 % 150 254 56
50 % 172 346 30
40 % 172 346 41
30 % 172 348 57
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 259 24
95 % 158 265 21
90 % 158 265 24
70 % 158 265 32
50 % 158 265 79
40 % 158 265 100
30 % 175 304 78
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 258 25
95 % 151 259 36
90 % 151 259 41
70 % 151 259 50
50 % 171 304 51
40 % 171 305 63
30 % 171 305 86

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.