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Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNR
Sequence Clusters for the Sequence Entities in PDB 1XNR
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 16S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 198 20
95% 106 198 36
90% 107 202 35
70% 107 202 46
50% 129 280 36
40% 130 282 46
30% 148 335 44
Entity #11: Chains: I - 16S Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 90 156
95% 106 198 41
90% 106 198 43
70% 106 198 55
50% 126 274 41
40% 126 274 54
30% 143 326 51
Entity #12: Chains: J - 16S Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 196 28
95% 106 197 44
90% 106 197 46
70% 106 197 58
50% 132 280 35
40% 132 280 45
30% 149 331 46
Entity #13: Chains: K - 16S Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 198 24
95% 106 198 40
90% 106 198 42
70% 106 198 54
50% 126 274 42
40% 145 330 35
30% 145 330 47
Entity #14: Chains: L - 16S Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 165 35
95% 106 205 31
90% 106 205 33
70% 126 286 24
50% 126 286 34
40% 126 286 44
30% 126 286 69
Entity #15: Chains: M - 16S Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 199 21
95% 106 199 37
90% 106 199 39
70% 106 199 51
50% 129 279 39
40% 129 279 51
30% 146 331 49
Entity #16: Chains: N - 16S Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 197 25
95% 106 197 45
90% 106 197 47
70% 106 197 59
50% 106 197 92
40% 106 197 114
30% 106 197 137
Entity #17: Chains: O - 16S Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 201 19
95% 110 206 30
90% 110 206 32
70% 110 206 43
50% 133 287 33
40% 133 287 43
30% 133 287 68
Entity #18: Chains: P - 16S Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 193 29
95% 106 198 42
90% 106 198 44
70% 106 198 56
50% 106 198 90
40% 106 198 112
30% 129 277 75
Entity #19: Chains: Q - 16S Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 80 222
95% 105 192 49
90% 106 196 48
70% 106 196 60
50% 106 196 93
40% 106 196 116
30% 106 196 139
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 16S Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 49 505
95% 98 174 71
90% 98 174 75
70% 98 174 88
50% 98 174 128
40% 98 174 146
30% 98 174 164
Entity #21: Chains: S - 16S Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 176 45
95% 98 176 67
90% 98 176 70
70% 98 176 83
50% 127 277 38
40% 127 277 48
30% 127 277 72
Entity #22: Chains: T - 16S Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 148 54
95% 106 197 43
90% 106 197 45
70% 106 197 57
50% 106 197 91
40% 106 197 113
30% 106 197 136
Entity #23: Chains: V - 16S Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 188 31
95% 106 188 51
90% 106 188 54
70% 106 188 66
50% 106 188 111
40% 106 188 133
30% 106 188 153
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 16S Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 198 22
95% 106 199 34
90% 106 199 37
70% 106 199 48
50% 106 199 88
40% 126 274 53
30% 126 274 74
Entity #5: Chains: C - 16S Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 173 48
95% 98 173 72
90% 98 173 76
70% 98 173 90
50% 103 213 75
40% 103 213 102
30% 103 213 122
Entity #6: Chains: D - 16S Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 191 30
95% 106 199 35
90% 106 199 38
70% 106 199 49
50% 126 274 40
40% 126 275 52
30% 126 275 73
Entity #7: Chains: E - 16S Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 198 23
95% 106 198 39
90% 106 198 41
70% 106 198 53
50% 127 278 37
40% 127 278 47
30% 127 280 71
Entity #8: Chains: F - 16S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 203 17
95% 114 209 29
90% 114 209 31
70% 114 209 42
50% 114 209 80
40% 114 209 106
30% 131 247 87
Entity #9: Chains: G - 16S Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 202 18
95% 107 203 32
90% 107 203 34
70% 107 203 45
50% 127 245 53
40% 127 246 70
30% 127 246 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.