Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 272 33
95 % 155 272 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 156 276 47
70 % 156 276 58
50 % 186 432 29
40 % 187 438 40
30 % 214 562 32
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 91 233
95 % 155 272 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 155 272 55
70 % 155 272 67
50 % 183 421 36
40 % 183 421 48
30 % 208 546 36
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 270 38
95 % 155 271 53 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 155 271 58
70 % 155 271 70
50 % 189 432 28
40 % 189 432 41
30 % 214 545 34
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 272 36
95 % 155 272 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 155 272 54
70 % 155 272 66
50 % 183 426 35
40 % 210 557 19
30 % 210 557 33
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 218 54
95 % 155 279 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 155 279 45
70 % 183 430 21
50 % 183 443 26
40 % 183 443 39
30 % 183 443 58
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 273 34
95 % 155 273 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 155 273 52
70 % 155 273 63
50 % 186 430 34
40 % 186 430 46
30 % 211 546 37
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 271 37
95 % 155 271 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 155 271 60
70 % 155 284 54
50 % 155 284 93
40 % 155 284 116
30 % 155 284 126
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 275 31
95 % 159 280 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 159 280 44
70 % 159 280 56
50 % 190 439 27
40 % 190 444 37
30 % 190 444 57
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 267 41
95 % 155 272 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 155 272 56
70 % 155 272 68
50 % 155 282 94
40 % 155 282 117
30 % 186 423 65
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 87 284
95 % 154 266 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 155 270 61
70 % 155 270 71
50 % 155 270 98
40 % 155 270 121
30 % 155 270 129
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 51 741
95 % 139 237 69 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 139 237 71
70 % 139 237 86
50 % 139 237 117
40 % 139 237 141
30 % 139 237 146
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 156 275 30
95 % 156 275 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 156 275 49
70 % 156 275 60
50 % 184 432 30
40 % 184 435 42
30 % 184 435 59
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 220 53
95 % 155 271 52
90 % 155 271 57
70 % 155 271 69
50 % 155 271 97
40 % 155 271 119
30 % 155 271 128
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 155 262 43
95 % 155 262 59
90 % 155 262 63
70 % 155 262 76
50 % 155 262 104
40 % 155 262 127
30 % 155 262 134
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 272 32
95 % 155 273 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 155 273 50
70 % 155 273 61
50 % 183 419 37
40 % 183 424 47
30 % 183 424 64
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 139 236 49
95 % 139 236 70 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 139 236 72
70 % 139 236 87
50 % 145 310 86
40 % 145 310 106
30 % 145 310 120
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 265 42
95 % 155 273 45
90 % 155 273 51
70 % 155 273 62
50 % 183 427 32
40 % 183 432 43
30 % 183 432 60
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 272 35
95 % 155 272 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 155 272 53
70 % 155 272 64
50 % 184 427 33
40 % 184 427 45
30 % 184 429 63
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 157 277 28
95 % 163 283 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 163 283 42
70 % 163 283 52
50 % 163 283 92
40 % 163 283 115
30 % 187 366 95
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 156 276 29
95 % 156 277 40 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 156 277 46
70 % 156 277 57
50 % 183 367 67
40 % 183 372 85
30 % 183 372 97

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures