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An Information Portal to 105906 Biological Macromolecular Structures

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNR
Sequence Clusters for the Sequence Entities in PDB 1XNR
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 16S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 191 22
95% 100 191 39
90% 101 195 39
70% 101 195 50
50% 122 271 35
40% 123 273 47
30% 141 323 44
Entity #11: Chains: I - 16S Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 89 144
95% 100 191 44
90% 100 191 46
70% 100 191 57
50% 119 265 40
40% 119 265 55
30% 136 314 52
Entity #12: Chains: J - 16S Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 189 28
95% 100 190 47
90% 100 190 50
70% 100 190 60
50% 125 271 34
40% 125 271 46
30% 125 276 66
Entity #13: Chains: K - 16S Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 191 26
95% 100 191 43
90% 100 191 45
70% 100 191 56
50% 119 265 41
40% 138 318 35
30% 138 318 45
Entity #14: Chains: L - 16S Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 160 35
95% 100 198 34
90% 100 198 36
70% 119 277 24
50% 119 277 33
40% 119 277 45
30% 119 277 69
Entity #15: Chains: M - 16S Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 192 23
95% 100 192 40
90% 100 192 43
70% 100 192 54
50% 122 270 38
40% 122 270 51
30% 139 319 49
Entity #16: Chains: N - 16S Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 190 27
95% 100 190 48
90% 100 190 51
70% 100 190 61
50% 100 190 94
40% 100 190 119
30% 100 190 142
Entity #17: Chains: O - 16S Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 194 21
95% 104 199 33
90% 104 199 35
70% 104 199 47
50% 126 278 32
40% 126 278 43
30% 126 278 67
Entity #18: Chains: P - 16S Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 186 29
95% 100 191 45
90% 100 191 48
70% 100 191 58
50% 100 191 92
40% 100 191 117
30% 122 268 78
Entity #19: Chains: Q - 16S Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 79 223
95% 99 185 49
90% 100 189 52
70% 100 189 62
50% 100 189 95
40% 100 189 120
30% 100 189 143
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 16S Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 49 494
95% 92 168 61
90% 92 168 64
70% 92 168 80
50% 92 168 117
40% 92 168 140
30% 92 168 163
Entity #21: Chains: S - 16S Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 170 37
95% 92 170 59
90% 92 170 63
70% 92 170 78
50% 120 268 37
40% 120 268 50
30% 120 268 74
Entity #22: Chains: T - 16S Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 142 42
95% 100 190 46
90% 100 190 49
70% 100 190 59
50% 100 190 93
40% 100 190 118
30% 100 190 141
Entity #23: Chains: V - 16S Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 181 34
95% 100 181 53
90% 100 181 55
70% 100 181 69
50% 100 181 105
40% 100 181 132
30% 100 181 151
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 16S Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 191 24
95% 100 192 37
90% 100 192 41
70% 100 192 52
50% 100 192 91
40% 119 265 54
30% 119 265 77
Entity #5: Chains: C - 16S Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 167 38
95% 92 167 63
90% 92 167 66
70% 92 167 82
50% 97 206 77
40% 97 206 101
30% 97 206 122
Entity #6: Chains: D - 16S Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 184 30
95% 100 192 38
90% 100 192 42
70% 100 192 53
50% 119 265 39
40% 119 266 52
30% 119 266 76
Entity #7: Chains: E - 16S Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 191 25
95% 100 191 42
90% 100 191 44
70% 100 191 55
50% 120 269 36
40% 120 269 49
30% 120 271 73
Entity #8: Chains: F - 16S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 196 19
95% 108 202 30
90% 108 202 31
70% 108 202 45
50% 108 202 84
40% 108 202 108
30% 124 239 93
Entity #9: Chains: G - 16S Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 195 20
95% 101 196 36
90% 101 196 38
70% 101 196 49
50% 120 237 56
40% 120 238 74
30% 120 238 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.