Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 256 31
95 % 150 256 42
90 % 151 260 43
70 % 151 260 52
50 % 181 362 29
40 % 182 364 39
30 % 203 443 33
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 91 198
95 % 150 256 46
90 % 150 256 51
70 % 150 256 60
50 % 178 356 36
40 % 178 356 46
30 % 197 433 40
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 254 36
95 % 150 255 49
90 % 150 255 54
70 % 150 255 64
50 % 184 362 28
40 % 184 362 38
30 % 203 436 36
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 256 34
95 % 150 256 45
90 % 150 256 50
70 % 150 256 59
50 % 178 356 35
40 % 199 438 20
30 % 199 439 34
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 208 46
95 % 150 263 36
90 % 150 263 41
70 % 178 367 22
50 % 178 368 27
40 % 178 368 37
30 % 178 368 57
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 257 32
95 % 150 257 43
90 % 150 257 48
70 % 150 257 57
50 % 181 361 32
40 % 181 361 43
30 % 200 437 39
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 35
95 % 150 255 50
90 % 150 255 55
70 % 150 256 62
50 % 150 256 88
40 % 150 256 108
30 % 150 256 120
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 259 29
95 % 154 264 35
90 % 154 264 40
70 % 154 264 50
50 % 185 369 26
40 % 185 370 36
30 % 185 370 56
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 251 37
95 % 150 256 47
90 % 150 256 52
70 % 150 256 61
50 % 150 256 87
40 % 150 257 107
30 % 181 359 63
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 87 225
95 % 149 250 51
90 % 150 254 56
70 % 150 254 66
50 % 150 254 90
40 % 150 254 111
30 % 150 254 123
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 616
95 % 134 221 64
90 % 134 221 69
70 % 134 221 79
50 % 134 221 111
40 % 134 221 132
30 % 134 221 143
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 259 27
95 % 151 259 38
90 % 151 259 44
70 % 151 259 53
50 % 179 359 31
40 % 179 359 41
30 % 179 359 59
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 204 48
95 % 150 255 48
90 % 150 255 53
70 % 150 255 63
50 % 150 255 89
40 % 150 255 110
30 % 150 255 122
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 246 39
95 % 150 246 54
90 % 150 246 59
70 % 150 246 69
50 % 150 246 95
40 % 150 246 118
30 % 150 246 131
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 256 30
95 % 150 257 39
90 % 150 257 45
70 % 150 257 54
50 % 178 355 34
40 % 178 356 44
30 % 178 356 62
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 220 45
95 % 134 220 65
90 % 134 220 70
70 % 134 220 80
50 % 140 276 78
40 % 140 276 100
30 % 140 276 112
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 249 38
95 % 150 257 40
90 % 150 257 46
70 % 150 257 55
50 % 178 356 33
40 % 178 357 42
30 % 178 357 61
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 256 33
95 % 150 256 44
90 % 150 256 49
70 % 150 256 58
50 % 179 360 30
40 % 179 360 40
30 % 179 362 58
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 261 25
95 % 158 267 34
90 % 158 267 37
70 % 158 267 46
50 % 158 267 84
40 % 158 267 103
30 % 182 313 77
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 260 26
95 % 151 261 37
90 % 151 261 42
70 % 151 261 51
50 % 178 313 54
40 % 178 314 68
30 % 178 314 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.