Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 30
95 % 150 255 40
90 % 151 259 42
70 % 151 259 51
50 % 178 356 29
40 % 179 358 39
30 % 198 434 32
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 91 196
95 % 150 255 44
90 % 150 255 49
70 % 150 255 58
50 % 175 350 36
40 % 175 350 45
30 % 193 425 39
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 253 35
95 % 150 254 48
90 % 150 254 53
70 % 150 254 63
50 % 181 356 28
40 % 181 356 38
30 % 199 429 35
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 33
95 % 150 255 43
90 % 150 255 48
70 % 150 255 57
50 % 175 350 35
40 % 195 430 21
30 % 195 431 34
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 207 46
95 % 150 262 35
90 % 150 262 40
70 % 175 361 23
50 % 175 362 27
40 % 175 362 37
30 % 175 362 56
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 256 31
95 % 150 256 41
90 % 150 256 46
70 % 150 256 55
50 % 178 355 32
40 % 178 355 43
30 % 196 430 38
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 254 34
95 % 150 254 49
90 % 150 254 54
70 % 150 255 60
50 % 150 255 86
40 % 150 255 107
30 % 150 255 119
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 258 27
95 % 154 263 34
90 % 154 263 39
70 % 154 263 48
50 % 182 363 26
40 % 182 364 36
30 % 182 364 55
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 250 36
95 % 150 255 45
90 % 150 255 50
70 % 150 255 59
50 % 150 255 85
40 % 150 256 106
30 % 178 353 61
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 87 224
95 % 149 249 51
90 % 150 253 55
70 % 150 253 64
50 % 150 253 88
40 % 150 253 109
30 % 150 253 122
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 608
95 % 134 220 63
90 % 134 220 68
70 % 134 220 78
50 % 134 220 108
40 % 134 220 131
30 % 134 220 142
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 258 26
95 % 151 258 37
90 % 151 258 43
70 % 151 258 52
50 % 176 353 31
40 % 176 353 41
30 % 176 353 58
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 203 47
95 % 150 254 47
90 % 150 254 52
70 % 150 254 62
50 % 150 254 87
40 % 150 254 108
30 % 150 254 120
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 245 38
95 % 150 245 53
90 % 150 245 57
70 % 150 245 68
50 % 150 245 93
40 % 150 245 117
30 % 150 245 131
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 28
95 % 150 256 38
90 % 150 256 44
70 % 150 256 53
50 % 175 349 34
40 % 175 350 44
30 % 175 350 60
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 219 44
95 % 134 219 64
90 % 134 219 69
70 % 134 219 79
50 % 140 273 78
40 % 140 273 99
30 % 140 273 112
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 248 37
95 % 150 256 39
90 % 150 256 45
70 % 150 256 54
50 % 175 350 33
40 % 175 351 42
30 % 175 351 59
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 255 32
95 % 150 255 42
90 % 150 255 47
70 % 150 255 56
50 % 176 354 30
40 % 176 354 40
30 % 176 356 57
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 260 24
95 % 158 266 33
90 % 158 266 36
70 % 158 266 45
50 % 158 266 83
40 % 158 266 101
30 % 179 309 77
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 259 25
95 % 151 260 36
90 % 151 260 41
70 % 151 260 50
50 % 175 309 53
40 % 175 310 66
30 % 175 310 86

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.