Sequence Similarity Clusters for the Entities in PDB 1XNR

Entity #1 | Chains: A
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
16S Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 271 32
95 % 154 271 45 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 155 275 47
70 % 155 275 57
50 % 185 428 27
40 % 186 434 37
30 % 211 551 30
Entity #11 | Chains: I
16S Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 91 220
95 % 154 271 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 154 271 55
70 % 154 271 66
50 % 182 417 33
40 % 182 417 46
30 % 205 535 34
Entity #12 | Chains: J
16S Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 269 39
95 % 154 270 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 154 270 58
70 % 154 270 69
50 % 188 428 26
40 % 188 428 38
30 % 211 535 32
Entity #13 | Chains: K
16S Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 271 35
95 % 154 271 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 154 271 54
70 % 154 271 65
50 % 182 422 32
40 % 207 546 19
30 % 207 546 31
Entity #14 | Chains: L
16S Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 217 52
95 % 154 278 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 154 278 44
70 % 182 426 18
50 % 182 439 24
40 % 182 439 36
30 % 182 439 56
Entity #15 | Chains: M
16S Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 272 33
95 % 154 272 46 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 154 272 51
70 % 154 272 62
50 % 185 426 31
40 % 185 426 44
30 % 208 535 35
Entity #16 | Chains: N
16S Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 270 36
95 % 154 270 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 154 270 59
70 % 154 283 53
50 % 154 283 91
40 % 154 283 112
30 % 154 283 124
Entity #17 | Chains: O
16S Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 274 30
95 % 158 279 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 158 279 43
70 % 158 279 54
50 % 189 435 25
40 % 189 440 35
30 % 189 440 55
Entity #18 | Chains: P
16S Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 266 41
95 % 154 271 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 154 271 56
70 % 154 271 67
50 % 154 281 92
40 % 154 281 114
30 % 185 419 63
Entity #19 | Chains: Q
16S Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 87 259
95 % 153 265 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 154 269 60
70 % 154 269 70
50 % 154 269 95
40 % 154 269 117
30 % 154 269 128
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
16S Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 51 724
95 % 138 236 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 138 236 69
70 % 138 236 81
50 % 138 236 114
40 % 138 236 137
30 % 138 236 145
Entity #21 | Chains: S
16S Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 274 29
95 % 155 274 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 155 274 48
70 % 155 274 58
50 % 183 428 28
40 % 183 431 40
30 % 183 431 57
Entity #22 | Chains: T
16S Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 138 219 51
95 % 154 270 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 154 270 57
70 % 154 270 68
50 % 154 270 94
40 % 154 270 116
30 % 154 270 127
Entity #23 | Chains: V
16S Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 261 43
95 % 154 261 59 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 154 261 63
70 % 154 261 74
50 % 154 261 100
40 % 154 261 122
30 % 154 261 135
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
16S Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 271 31
95 % 154 272 43
90 % 154 272 49
70 % 154 272 59
50 % 182 415 34
40 % 182 420 45
30 % 182 420 61
Entity #5 | Chains: C
16S Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 235 49
95 % 138 235 66
90 % 138 235 70
70 % 138 235 82
50 % 144 309 85
40 % 144 309 103
30 % 144 309 118
Entity #6 | Chains: D
16S Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 264 42
95 % 154 272 44 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 154 272 50
70 % 154 272 60
50 % 182 423 29
40 % 182 428 42
30 % 182 428 58
Entity #7 | Chains: E
16S Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 271 34
95 % 154 271 48 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 0.6
PDBFlex
90 % 154 271 53
70 % 154 271 64
50 % 183 423 30
40 % 183 423 43
30 % 183 425 60
Entity #8 | Chains: F
16S Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 276 27
95 % 162 282 37
90 % 162 282 42
70 % 162 282 52
50 % 162 282 90
40 % 162 282 111
30 % 186 362 93
Entity #9 | Chains: G
16S Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 275 28
95 % 155 276 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.9
PDBFlex
90 % 155 276 46
70 % 155 276 56
50 % 182 363 66
40 % 182 368 82
30 % 182 368 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.