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An Information Portal to 105212 Biological Macromolecular Structures

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNR
Sequence Clusters for the Sequence Entities in PDB 1XNR
Entity #1: Chains: A - 16S Ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 16S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 268 21
95% 126 268 40
90% 127 272 39
70% 127 272 50
50% 170 384 35
40% 171 386 47
30% 206 459 43
Entity #11: Chains: I - 16S Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 113 155
95% 126 268 44
90% 126 268 46
70% 126 268 56
50% 167 378 40
40% 167 378 54
30% 201 450 50
Entity #12: Chains: J - 16S Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 265 27
95% 126 267 47
90% 126 267 49
70% 126 267 59
50% 173 384 34
40% 173 384 46
30% 173 389 65
Entity #13: Chains: K - 16S Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 268 25
95% 126 268 43
90% 126 268 45
70% 126 268 55
50% 167 378 41
40% 203 454 34
30% 203 454 44
Entity #14: Chains: L - 16S Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 237 35
95% 126 275 35
90% 126 275 37
70% 167 390 24
50% 167 390 33
40% 167 390 45
30% 167 390 68
Entity #15: Chains: M - 16S Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 269 22
95% 126 269 41
90% 126 269 43
70% 126 269 53
50% 167 380 38
40% 167 380 51
30% 201 452 47
Entity #16: Chains: N - 16S Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 267 26
95% 126 267 48
90% 126 267 50
70% 126 267 60
50% 126 267 94
40% 126 267 119
30% 126 267 141
Entity #17: Chains: O - 16S Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 271 20
95% 130 276 32
90% 130 276 34
70% 130 276 47
50% 174 391 32
40% 174 391 43
30% 174 391 67
Entity #18: Chains: P - 16S Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 263 28
95% 126 268 45
90% 126 268 47
70% 126 268 57
50% 126 268 92
40% 126 268 117
30% 167 378 76
Entity #19: Chains: Q - 16S Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 92 221
95% 125 262 49
90% 126 266 51
70% 126 266 61
50% 126 266 95
40% 126 266 120
30% 126 266 142
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 16S Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 49 486
95% 120 232 61
90% 120 232 64
70% 120 232 78
50% 120 232 116
40% 120 232 139
30% 120 232 161
Entity #21: Chains: S - 16S Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 234 37
95% 120 234 59
90% 120 234 63
70% 120 234 77
50% 168 381 37
40% 168 381 49
30% 168 381 72
Entity #22: Chains: T - 16S Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 206 42
95% 126 267 46
90% 126 267 48
70% 126 267 58
50% 126 267 93
40% 126 267 118
30% 126 267 140
Entity #23: Chains: V - 16S Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 249 34
95% 126 249 53
90% 126 249 55
70% 126 249 68
50% 126 249 105
40% 126 249 132
30% 126 249 151
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 16S Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 268 23
95% 126 269 38
90% 126 269 41
70% 126 269 51
50% 126 269 91
40% 167 378 53
30% 167 378 75
Entity #5: Chains: C - 16S Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 230 38
95% 119 230 63
90% 119 230 66
70% 119 230 80
50% 134 293 74
40% 134 293 99
30% 134 293 119
Entity #6: Chains: D - 16S Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 261 29
95% 126 269 39
90% 126 269 42
70% 126 269 52
50% 167 378 39
40% 167 379 52
30% 167 379 74
Entity #7: Chains: E - 16S Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 268 24
95% 126 268 42
90% 126 268 44
70% 126 268 54
50% 168 382 36
40% 168 382 48
30% 168 384 71
Entity #8: Chains: F - 16S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 273 18
95% 134 279 29
90% 134 279 30
70% 134 279 44
50% 134 279 86
40% 134 279 108
30% 162 328 94
Entity #9: Chains: G - 16S Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 272 19
95% 127 273 36
90% 127 273 38
70% 127 273 49
50% 155 323 56
40% 155 324 74
30% 155 324 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.