Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 284 31
95 % 169 284 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 170 288 45
70 % 170 288 54
50 % 200 446 28
40 % 201 452 39
30 % 230 577 32
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 93 224
95 % 169 284 48 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 169 284 53
70 % 169 284 63
50 % 197 435 35
40 % 197 435 47
30 % 224 561 35
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 282 38
95 % 169 283 51
90 % 169 283 56
70 % 169 283 67
50 % 203 446 27
40 % 203 446 40
30 % 230 560 34
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 284 35
95 % 169 284 47 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 169 284 52
70 % 169 284 62
50 % 197 440 34
40 % 226 572 19
30 % 226 572 33
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 104 220 54
95 % 169 291 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 169 291 43
70 % 197 444 18
50 % 197 457 24
40 % 197 457 37
30 % 197 457 57
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 285 32
95 % 169 285 44 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 169 285 49
70 % 169 285 59
50 % 200 444 33
40 % 200 444 45
30 % 227 561 36
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 283 36
95 % 169 283 52 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 169 283 57
70 % 169 296 50
50 % 169 296 90
40 % 169 296 112
30 % 169 296 124
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 287 29
95 % 173 292 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 173 292 41
70 % 173 292 51
50 % 204 453 26
40 % 204 458 36
30 % 204 458 55
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 279 39
95 % 169 284 49 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 169 284 54
70 % 169 284 64
50 % 169 294 91
40 % 169 294 114
30 % 200 437 64
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 91 263
95 % 168 278 53 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 169 282 58
70 % 169 282 68
50 % 169 282 96
40 % 169 282 119
30 % 169 282 128
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 51 749
95 % 148 241 66 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 148 241 69
70 % 148 241 84
50 % 148 241 114
40 % 148 241 139
30 % 148 241 146
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 170 287 28
95 % 170 287 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 170 287 46
70 % 170 287 55
50 % 198 446 29
40 % 198 449 41
30 % 198 449 59
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 231 50
95 % 169 283 50 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 169 283 55
70 % 169 283 66
50 % 169 283 95
40 % 169 283 118
30 % 169 283 127
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 167 272 43
95 % 167 272 58 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 167 272 63
70 % 167 272 73
50 % 167 272 99
40 % 167 272 124
30 % 167 272 131
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 284 30
95 % 169 285 41 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 169 285 47
70 % 169 285 56
50 % 197 433 36
40 % 197 438 46
30 % 197 438 62
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 240 46
95 % 148 240 67 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 148 240 70
70 % 148 240 85
50 % 154 315 86
40 % 154 315 104
30 % 154 315 118
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 167 277 40
95 % 169 285 42 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 169 285 48
70 % 169 285 57
50 % 197 441 30
40 % 197 446 42
30 % 197 446 60
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 284 34
95 % 169 284 46 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 169 284 51
70 % 169 284 61
50 % 198 441 32
40 % 198 441 44
30 % 198 443 61
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 171 289 26
95 % 177 295 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 177 295 39
70 % 177 295 48
50 % 177 295 88
40 % 177 295 110
30 % 201 378 86
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 170 288 27
95 % 170 289 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 170 289 44
70 % 170 289 53
50 % 197 380 64
40 % 197 385 75
30 % 197 385 90

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 274
2 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 274
3 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 274
4 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 274
5 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 274
6 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274
7 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274
8 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274
9 3T1Y 18 R 30S ribosomal protein S18 274
10 1XMQ 20 R 30S Ribosomal Protein S18 274
11 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 274
12 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274
13 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274
14 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 274
15 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274
16 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274
17 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274
18 1XNR 20 R 16S Ribosomal protein S18 274
19 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274
20 1XNQ 20 R Ribosomal protein S18 274
21 1XMO 20 R 30S ribosomal protein S18 274
22 3T1H 18 R 30S ribosomal protein S18 274
23 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274
24 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274
25 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274
26 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274
27 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274
28 2E5L 19 R 30S ribosomal protein S18 274
29 2HHH 18 R 30S ribosomal protein S18 274
30 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274
31 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274
32 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274
33 2ZM6 18 R 30S ribosomal protein S18 274
34 2F4V 19 R 30S ribosomal protein S18 274
35 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274
36 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274
37 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274
38 4V4Y 20 AU 30S ribosomal protein S18 274
39 4V4X 20 AU 30S ribosomal protein S18 274
40 4V4Z 21 AU 30S ribosomal protein S18 274
41 4V4P 53 BU 30S ribosomal protein S18 274
42 4V4R 21 AR 30S ribosomal protein S18 274
43 4V4S 21 AR 30S ribosomal protein S18 274
44 4V4T 21 AR 30S ribosomal protein S18 274
45 5IMQ 25 V 30S ribosomal protein S18 274
46 5IMR 18 V 30S ribosomal protein S18 274
47 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562
48 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274
49 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274
50 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274
51 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274