Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 271 32
95 % 160 271 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 161 275 47
70 % 161 275 58
50 % 191 431 28
40 % 192 437 39
30 % 219 557 32
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 91 228
95 % 160 271 51 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 160 271 55
70 % 160 271 66
50 % 188 420 34
40 % 188 420 47
30 % 213 541 35
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 269 40
95 % 160 270 54
90 % 160 270 58
70 % 160 270 69
50 % 194 431 27
40 % 194 431 40
30 % 219 540 34
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 271 36
95 % 160 271 50 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 160 271 54
70 % 160 271 65
50 % 188 425 33
40 % 215 552 19
30 % 215 552 33
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 102 217 54
95 % 160 278 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 160 278 44
70 % 188 429 18
50 % 188 442 24
40 % 188 442 38
30 % 188 442 58
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 272 33
95 % 160 272 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 160 272 51
70 % 160 272 63
50 % 191 429 32
40 % 191 429 45
30 % 216 541 37
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 270 37
95 % 160 270 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 160 270 59
70 % 160 283 54
50 % 160 283 92
40 % 160 283 115
30 % 160 283 124
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 274 30
95 % 164 279 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 164 279 43
70 % 164 279 55
50 % 195 438 26
40 % 195 443 37
30 % 195 443 56
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 266 41
95 % 160 271 52 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 160 271 56
70 % 160 271 67
50 % 160 281 93
40 % 160 281 116
30 % 191 422 65
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 87 264
95 % 159 265 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 160 269 60
70 % 160 269 70
50 % 160 269 97
40 % 160 269 121
30 % 160 269 128
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 51 734
95 % 144 236 66 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 144 236 70
70 % 144 236 85
50 % 144 236 118
40 % 144 236 141
30 % 144 236 146
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 161 274 29
95 % 161 274 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 161 274 48
70 % 161 274 59
50 % 189 431 29
40 % 189 434 42
30 % 189 434 59
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 143 219 53
95 % 160 270 53 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 160 270 57
70 % 160 270 68
50 % 160 270 96
40 % 160 270 119
30 % 160 270 127
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 261 43
95 % 160 261 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 160 261 63
70 % 160 261 75
50 % 160 261 102
40 % 160 261 124
30 % 160 261 134
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 271 31
95 % 160 272 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 160 272 49
70 % 160 272 60
50 % 188 418 35
40 % 188 423 46
30 % 188 423 63
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 144 235 49
95 % 144 235 67 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 144 235 71
70 % 144 235 86
50 % 150 309 86
40 % 150 309 106
30 % 150 309 119
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 158 264 42
95 % 160 272 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 160 272 50
70 % 160 272 61
50 % 188 426 30
40 % 188 431 43
30 % 188 431 60
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 271 35
95 % 160 271 49 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 160 271 53
70 % 160 271 64
50 % 189 426 31
40 % 189 426 44
30 % 189 428 62
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 162 276 27
95 % 168 282 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 168 282 42
70 % 168 282 53
50 % 168 282 91
40 % 168 282 114
30 % 192 365 93
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 161 275 28
95 % 161 276 42 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 161 276 46
70 % 161 276 57
50 % 188 366 67
40 % 188 371 84
30 % 188 371 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 274
2 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 274
3 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 274
4 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 274
5 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 274
6 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274
7 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274
8 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274
9 3T1Y 18 R 30S ribosomal protein S18 274
10 1XMQ 20 R 30S Ribosomal Protein S18 274
11 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 274
12 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274
13 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274
14 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 274
15 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274
16 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274
17 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274
18 1XNR 20 R 16S Ribosomal protein S18 274
19 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274
20 1XNQ 20 R Ribosomal protein S18 274
21 1XMO 20 R 30S ribosomal protein S18 274
22 3T1H 18 R 30S ribosomal protein S18 274
23 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274
24 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274
25 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274
26 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274
27 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274
28 2E5L 19 R 30S ribosomal protein S18 274
29 2HHH 18 R 30S ribosomal protein S18 274
30 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274
31 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274
32 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274
33 2ZM6 18 R 30S ribosomal protein S18 274
34 2F4V 19 R 30S ribosomal protein S18 274
35 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274
36 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274
37 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274
38 4V4Y 20 AU 30S ribosomal protein S18 274
39 4V4X 20 AU 30S ribosomal protein S18 274
40 4V4Z 21 AU 30S ribosomal protein S18 274
41 4V4P 53 BU 30S ribosomal protein S18 274
42 4V4R 21 AR 30S ribosomal protein S18 274
43 4V4S 21 AR 30S ribosomal protein S18 274
44 4V4T 21 AR 30S ribosomal protein S18 274
45 5IMQ 25 V 30S ribosomal protein S18 274
46 5IMR 18 V 30S ribosomal protein S18 274
47 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562
48 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274
49 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274
50 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274
51 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274