POP-OUT | CLOSE

An Information Portal to 110071 Biological Macromolecular Structures

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 31
95% 127 220 43
90% 128 224 43
70% 128 224 53
50% 150 306 33
40% 151 308 43
30% 170 364 40
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 90 166
95% 127 220 47
90% 127 220 51
70% 127 220 61
50% 147 300 43
40% 147 300 52
30% 165 355 48
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 218 36
95% 127 219 50
90% 127 219 54
70% 127 219 65
50% 153 306 31
40% 153 306 42
30% 171 359 42
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 34
95% 127 220 46
90% 127 220 50
70% 127 220 60
50% 147 300 42
40% 167 360 31
30% 167 361 41
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 183 46
95% 127 227 27
90% 127 227 32
70% 147 311 21
50% 147 312 30
40% 147 312 41
30% 147 312 56
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 221 32
95% 127 221 44
90% 127 221 48
70% 127 221 58
50% 150 305 38
40% 150 305 50
30% 168 360 47
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 219 35
95% 127 219 51
90% 127 219 55
70% 127 220 63
50% 127 220 92
40% 127 220 113
30% 127 220 126
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 223 28
95% 131 228 25
90% 131 228 29
70% 131 228 41
50% 154 313 28
40% 154 314 39
30% 154 314 55
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 215 37
95% 127 220 48
90% 127 220 52
70% 127 220 62
50% 127 220 91
40% 127 221 112
30% 150 303 69
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 80 223
95% 126 214 56
90% 127 218 57
70% 127 218 67
50% 127 218 94
40% 127 218 116
30% 127 218 128
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 517
95% 118 194 64
90% 118 194 66
70% 118 194 78
50% 118 194 111
40% 118 194 129
30% 118 194 148
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 223 27
95% 128 223 40
90% 128 223 45
70% 128 223 55
50% 148 303 35
40% 148 303 47
30% 148 303 65
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 170 49
95% 127 219 49
90% 127 219 53
70% 127 219 64
50% 127 219 93
40% 127 219 114
30% 127 219 127
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 210 39
95% 127 210 59
90% 127 210 62
70% 127 210 72
50% 127 210 98
40% 127 210 120
30% 127 210 133
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 30
95% 127 221 41
90% 127 221 46
70% 127 221 56
50% 147 299 41
40% 147 300 51
30% 147 300 68
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 193 45
95% 118 193 65
90% 118 193 67
70% 118 193 79
50% 123 236 78
40% 123 236 99
30% 123 236 119
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 213 38
95% 127 221 42
90% 127 221 47
70% 127 221 57
50% 147 300 39
40% 147 301 49
30% 147 301 67
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 33
95% 127 220 45
90% 127 220 49
70% 127 220 59
50% 148 304 34
40% 148 304 46
30% 148 306 64
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 225 24
95% 135 231 23
90% 135 231 28
70% 135 231 39
50% 135 231 82
40% 135 231 104
30% 152 270 77
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 224 26
95% 128 225 38
90% 128 225 42
70% 128 225 52
50% 148 268 50
40% 148 269 60
30% 148 269 80
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.