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Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 199 22
95% 112 199 37
90% 113 203 36
70% 113 203 45
50% 135 283 36
40% 136 285 46
30% 155 339 44
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 90 159
95% 112 199 41
90% 112 199 43
70% 112 199 55
50% 132 277 42
40% 132 277 54
30% 150 330 50
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 197 29
95% 112 198 46
90% 112 198 48
70% 112 198 61
50% 138 283 35
40% 138 283 45
30% 156 334 46
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 199 26
95% 112 199 40
90% 112 199 42
70% 112 199 54
50% 132 277 41
40% 152 335 35
30% 152 336 45
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 166 36
95% 112 206 32
90% 112 206 34
70% 132 288 24
50% 132 289 34
40% 132 289 44
30% 132 289 69
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 200 23
95% 112 200 38
90% 112 200 40
70% 112 200 51
50% 135 282 39
40% 135 282 50
30% 153 335 49
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 198 27
95% 112 198 47
90% 112 198 49
70% 112 199 57
50% 112 199 90
40% 112 199 113
30% 112 199 137
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 202 21
95% 116 207 31
90% 116 207 33
70% 116 207 43
50% 139 290 33
40% 139 291 43
30% 139 291 67
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 194 30
95% 112 199 42
90% 112 199 44
70% 112 199 56
50% 112 199 89
40% 112 200 112
30% 135 280 76
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 80 223
95% 111 193 50
90% 112 197 50
70% 112 197 62
50% 112 197 94
40% 112 197 117
30% 112 197 139
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 513
95% 104 174 72
90% 104 174 76
70% 104 174 90
50% 104 174 131
40% 104 174 149
30% 104 174 164
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 202 20
95% 113 202 34
90% 113 202 37
70% 113 202 47
50% 133 280 38
40% 133 280 49
30% 133 280 73
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 149 54
95% 112 198 45
90% 112 198 47
70% 112 198 60
50% 112 198 93
40% 112 198 115
30% 112 198 138
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 189 32
95% 112 189 52
90% 112 189 55
70% 112 189 68
50% 112 189 112
40% 112 189 135
30% 112 189 153
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 199 24
95% 112 200 35
90% 112 200 38
70% 112 200 48
50% 132 276 43
40% 132 277 52
30% 132 277 75
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 173 48
95% 104 173 73
90% 104 173 77
70% 104 173 92
50% 109 214 78
40% 109 214 102
30% 109 214 123
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 192 31
95% 112 200 36
90% 112 200 39
70% 112 200 49
50% 132 277 40
40% 132 278 51
30% 132 278 74
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 199 25
95% 112 199 39
90% 112 199 41
70% 112 199 52
50% 133 281 37
40% 133 281 48
30% 133 283 72
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 204 18
95% 120 210 30
90% 120 210 32
70% 120 210 42
50% 120 210 83
40% 120 210 107
30% 137 249 87
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 203 19
95% 113 204 33
90% 113 204 35
70% 113 204 44
50% 133 247 56
40% 133 248 71
30% 133 248 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.