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Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 219 31
95% 126 219 44
90% 127 223 45
70% 127 223 55
50% 150 306 35
40% 151 308 43
30% 170 373 37
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 89 181
95% 126 219 48
90% 126 219 52
70% 126 219 62
50% 147 300 43
40% 147 300 52
30% 165 364 46
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 217 36
95% 126 218 51
90% 126 218 55
70% 126 218 66
50% 153 306 31
40% 153 306 42
30% 171 368 40
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 219 34
95% 126 219 47
90% 126 219 51
70% 126 219 61
50% 147 300 42
40% 167 369 30
30% 167 370 38
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 182 46
95% 126 226 39
90% 126 226 43
70% 147 311 22
50% 147 312 30
40% 147 312 41
30% 147 312 57
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 220 32
95% 126 220 45
90% 126 220 49
70% 126 220 59
50% 150 305 39
40% 150 305 50
30% 168 369 44
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 218 35
95% 126 218 52
90% 126 218 56
70% 126 219 64
50% 126 219 92
40% 126 219 114
30% 126 219 128
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 222 29
95% 130 227 36
90% 130 227 40
70% 130 227 52
50% 154 313 29
40% 154 314 39
30% 154 314 54
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 214 37
95% 126 219 49
90% 126 219 53
70% 126 219 63
50% 126 219 91
40% 126 220 113
30% 150 303 70
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 80 226
95% 125 213 56
90% 126 217 58
70% 126 217 69
50% 126 217 94
40% 126 217 116
30% 126 217 130
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 532
95% 118 194 64
90% 118 194 67
70% 118 194 79
50% 118 194 113
40% 118 194 131
30% 118 194 150
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 222 28
95% 127 222 41
90% 127 222 46
70% 127 222 56
50% 148 303 38
40% 148 303 48
30% 148 303 67
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 169 49
95% 126 218 50
90% 126 218 54
70% 126 218 65
50% 126 218 93
40% 126 218 115
30% 126 218 129
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 209 40
95% 126 209 59
90% 126 209 62
70% 126 209 73
50% 126 209 100
40% 126 209 123
30% 126 209 135
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 219 30
95% 126 220 42
90% 126 220 47
70% 126 220 57
50% 147 299 41
40% 147 300 51
30% 147 300 69
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 193 45
95% 118 193 65
90% 118 193 68
70% 118 193 80
50% 124 237 77
40% 124 237 102
30% 124 237 121
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 212 38
95% 126 220 43
90% 126 220 48
70% 126 220 58
50% 147 300 40
40% 147 301 49
30% 147 301 68
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 219 33
95% 126 219 46
90% 126 219 50
70% 126 219 60
50% 148 304 37
40% 148 304 47
30% 148 306 63
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 224 25
95% 134 230 24
90% 134 230 29
70% 134 230 41
50% 134 230 83
40% 134 230 108
30% 151 269 80
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 223 27
95% 127 224 40
90% 127 224 44
70% 127 224 54
50% 147 267 51
40% 147 268 64
30% 147 268 83
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.