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An Information Portal to 105025 Biological Macromolecular Structures

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 268 21
95% 135 268 40
90% 136 272 39
70% 136 272 50
50% 179 384 35
40% 180 386 47
30% 217 459 43
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 113 150
95% 135 268 44
90% 135 268 46
70% 135 268 56
50% 176 378 40
40% 176 378 54
30% 212 450 50
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 265 27
95% 135 267 47
90% 135 267 49
70% 135 267 59
50% 182 384 34
40% 182 384 46
30% 182 389 65
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 268 25
95% 135 268 43
90% 135 268 45
70% 135 268 55
50% 176 378 41
40% 214 454 34
30% 214 454 44
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 237 35
95% 135 275 35
90% 135 275 37
70% 176 390 24
50% 176 390 33
40% 176 390 45
30% 176 390 68
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 269 22
95% 135 269 41
90% 135 269 43
70% 135 269 53
50% 176 380 38
40% 176 380 51
30% 212 452 47
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 267 26
95% 135 267 48
90% 135 267 50
70% 135 267 60
50% 135 267 93
40% 135 267 119
30% 135 267 141
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 271 20
95% 139 276 32
90% 139 276 34
70% 139 276 47
50% 183 391 32
40% 183 391 43
30% 183 391 67
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 263 28
95% 135 268 45
90% 135 268 47
70% 135 268 57
50% 135 268 91
40% 135 268 117
30% 176 378 76
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 92 221
95% 134 262 49
90% 135 266 51
70% 135 266 61
50% 135 266 94
40% 135 266 120
30% 135 266 142
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 486
95% 129 232 61
90% 129 232 64
70% 129 232 78
50% 129 232 115
40% 129 232 139
30% 129 232 160
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 234 37
95% 129 234 59
90% 129 234 63
70% 129 234 77
50% 177 381 37
40% 177 381 49
30% 177 381 72
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 206 42
95% 135 267 46
90% 135 267 48
70% 135 267 58
50% 135 267 92
40% 135 267 118
30% 135 267 140
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 249 34
95% 135 249 53
90% 135 249 55
70% 135 249 67
50% 135 249 104
40% 135 249 132
30% 135 249 151
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 268 23
95% 135 269 38
90% 135 269 41
70% 135 269 51
50% 135 269 90
40% 176 378 53
30% 176 378 75
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 230 38
95% 128 230 63
90% 128 230 66
70% 128 230 80
50% 143 293 73
40% 143 293 99
30% 143 293 119
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 261 29
95% 135 269 39
90% 135 269 42
70% 135 269 52
50% 176 378 39
40% 176 379 52
30% 176 379 74
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 268 24
95% 135 268 42
90% 135 268 44
70% 135 268 54
50% 177 382 36
40% 177 382 48
30% 177 384 71
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 273 18
95% 143 279 29
90% 143 279 30
70% 143 279 44
50% 143 279 84
40% 143 279 106
30% 171 328 94
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 272 19
95% 136 273 36
90% 136 273 38
70% 136 273 49
50% 164 323 56
40% 164 324 73
30% 164 324 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.