Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 239 19
95 % 143 239 31
90 % 144 243 30
70 % 144 243 41
50 % 167 330 31
40 % 168 332 41
30 % 187 401 37
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 90 190
95 % 143 239 35
90 % 143 239 40
70 % 143 239 49
50 % 164 324 39
40 % 164 324 49
30 % 182 392 47
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 237 25
95 % 143 238 38
90 % 143 238 43
70 % 143 238 53
50 % 170 330 30
40 % 170 330 40
30 % 188 396 41
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 239 23
95 % 143 239 34
90 % 143 239 39
70 % 143 239 48
50 % 164 324 38
40 % 184 397 27
30 % 184 398 39
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 194 42
95 % 143 246 22
90 % 143 246 27
70 % 164 335 23
50 % 164 336 29
40 % 164 336 39
30 % 164 336 56
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 240 20
95 % 143 240 32
90 % 143 240 37
70 % 143 240 46
50 % 167 329 35
40 % 167 329 46
30 % 185 397 46
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 238 24
95 % 143 238 39
90 % 143 238 44
70 % 143 239 51
50 % 143 239 82
40 % 143 239 108
30 % 143 239 124
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 242 16
95 % 147 247 21
90 % 147 247 26
70 % 147 247 37
50 % 171 337 27
40 % 171 338 38
30 % 171 338 54
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 234 26
95 % 143 239 36
90 % 143 239 41
70 % 143 239 50
50 % 143 239 81
40 % 143 240 106
30 % 167 327 65
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 84 225
95 % 142 233 40
90 % 143 237 45
70 % 143 237 54
50 % 143 237 87
40 % 143 237 113
30 % 143 237 128
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 49 566
95 % 128 205 63
90 % 128 205 66
70 % 128 205 75
50 % 128 205 109
40 % 128 205 129
30 % 128 205 145
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 242 15
95 % 144 242 26
90 % 144 242 31
70 % 144 242 42
50 % 165 327 34
40 % 165 327 44
30 % 165 327 60
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 188 48
95 % 143 238 37
90 % 143 238 42
70 % 143 238 52
50 % 143 238 83
40 % 143 238 110
30 % 143 238 126
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 229 39
95 % 143 229 54
90 % 143 229 58
70 % 143 229 69
50 % 143 229 97
40 % 143 229 118
30 % 143 229 133
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 239 17
95 % 143 240 27
90 % 143 240 33
70 % 143 240 43
50 % 164 323 37
40 % 164 324 47
30 % 164 324 63
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 204 43
95 % 128 204 64
90 % 128 204 67
70 % 128 204 76
50 % 134 252 68
40 % 134 252 93
30 % 134 252 110
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 232 27
95 % 143 240 28
90 % 143 240 34
70 % 143 240 44
50 % 164 324 36
40 % 164 325 45
30 % 164 325 62
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 239 22
95 % 143 239 33
90 % 143 239 38
70 % 143 239 47
50 % 165 328 33
40 % 165 328 43
30 % 165 330 59
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 145 244 13
95 % 151 250 20
90 % 151 250 25
70 % 151 250 35
50 % 151 250 70
40 % 151 250 94
30 % 168 289 80
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 243 14
95 % 144 244 25
90 % 144 244 29
70 % 144 244 40
50 % 164 289 50
40 % 164 290 62
30 % 164 290 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.