Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 254 29
95 % 156 254 40
90 % 157 258 42
70 % 157 258 51
50 % 180 348 29
40 % 181 350 39
30 % 202 425 33
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 91 192
95 % 156 254 45
90 % 156 254 50
70 % 156 254 59
50 % 177 342 37
40 % 177 342 48
30 % 197 416 42
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 252 35
95 % 156 253 48
90 % 156 253 53
70 % 156 253 63
50 % 183 348 28
40 % 183 348 38
30 % 203 420 36
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 254 33
95 % 156 254 44
90 % 156 254 49
70 % 156 254 58
50 % 177 342 36
40 % 199 421 22
30 % 199 422 35
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 206 45
95 % 156 261 35
90 % 156 261 39
70 % 177 353 23
50 % 177 354 27
40 % 177 354 37
30 % 177 354 56
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 255 30
95 % 156 255 41
90 % 156 255 46
70 % 156 255 55
50 % 180 347 33
40 % 180 347 45
30 % 200 421 41
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 253 34
95 % 156 253 49
90 % 156 253 54
70 % 156 254 61
50 % 156 254 86
40 % 156 254 106
30 % 156 254 119
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 257 27
95 % 160 262 34
90 % 160 262 38
70 % 160 262 49
50 % 184 355 26
40 % 184 356 36
30 % 184 356 55
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 249 36
95 % 156 254 46
90 % 156 254 51
70 % 156 254 60
50 % 156 254 85
40 % 156 255 105
30 % 180 345 63
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 87 223
95 % 155 248 50
90 % 156 252 55
70 % 156 252 64
50 % 156 252 88
40 % 156 252 108
30 % 156 252 121
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 598
95 % 140 219 63
90 % 140 219 68
70 % 140 219 78
50 % 140 219 108
40 % 140 219 129
30 % 140 219 142
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 257 26
95 % 157 257 37
90 % 157 257 43
70 % 157 257 52
50 % 178 345 31
40 % 178 345 42
30 % 178 345 60
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 202 47
95 % 156 253 47
90 % 156 253 52
70 % 156 253 62
50 % 156 253 87
40 % 156 253 107
30 % 156 253 120
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 244 38
95 % 156 244 54
90 % 156 244 57
70 % 156 244 68
50 % 156 244 92
40 % 156 244 114
30 % 156 244 128
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 254 28
95 % 156 255 38
90 % 156 255 44
70 % 156 255 53
50 % 177 341 35
40 % 177 342 47
30 % 177 342 62
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 218 44
95 % 140 218 64
90 % 140 218 69
70 % 140 218 79
50 % 146 269 79
40 % 146 269 97
30 % 146 269 112
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 247 37
95 % 156 255 39
90 % 156 255 45
70 % 156 255 54
50 % 177 342 34
40 % 177 343 44
30 % 177 343 61
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 254 32
95 % 156 254 43
90 % 156 254 48
70 % 156 254 57
50 % 178 346 30
40 % 178 346 41
30 % 178 348 57
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 259 24
95 % 164 265 33
90 % 164 265 36
70 % 164 265 44
50 % 164 265 82
40 % 164 265 100
30 % 181 304 78
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 258 25
95 % 157 259 36
90 % 157 259 41
70 % 157 259 50
50 % 177 304 51
40 % 177 305 63
30 % 177 305 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.