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An Information Portal to 105339 Biological Macromolecular Structures

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 189 22
95% 104 189 40
90% 105 193 39
70% 105 193 51
50% 126 269 35
40% 127 271 46
30% 146 321 44
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 87 159
95% 104 189 44
90% 104 189 47
70% 104 189 57
50% 123 263 40
40% 123 263 55
30% 141 312 51
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 187 28
95% 104 188 47
90% 104 188 50
70% 104 188 60
50% 129 269 34
40% 129 269 45
30% 129 274 65
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 189 26
95% 104 189 43
90% 104 189 46
70% 104 189 56
50% 123 263 41
40% 143 316 35
30% 143 316 45
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 158 35
95% 104 196 35
90% 104 196 37
70% 123 275 24
50% 123 275 33
40% 123 275 44
30% 123 275 69
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 190 23
95% 104 190 41
90% 104 190 44
70% 104 190 54
50% 126 268 38
40% 126 268 51
30% 144 317 48
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 188 27
95% 104 188 48
90% 104 188 51
70% 104 188 61
50% 104 188 94
40% 104 188 119
30% 104 188 142
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 192 21
95% 108 197 33
90% 108 197 35
70% 108 197 47
50% 130 276 32
40% 130 276 43
30% 130 276 66
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 184 29
95% 104 189 45
90% 104 189 48
70% 104 189 58
50% 104 189 92
40% 104 189 117
30% 126 266 76
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 79 222
95% 103 183 49
90% 104 187 52
70% 104 187 62
50% 104 187 95
40% 104 187 120
30% 104 187 143
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 491
95% 98 168 61
90% 98 168 64
70% 98 168 80
50% 98 168 117
40% 98 168 139
30% 98 168 161
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 170 37
95% 98 170 59
90% 98 170 63
70% 98 170 78
50% 124 266 37
40% 124 266 50
30% 124 266 73
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 140 42
95% 104 188 46
90% 104 188 49
70% 104 188 59
50% 104 188 93
40% 104 188 118
30% 104 188 141
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 179 34
95% 104 179 54
90% 104 179 56
70% 104 179 69
50% 104 179 105
40% 104 179 132
30% 104 179 151
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 189 24
95% 104 190 38
90% 104 190 42
70% 104 190 52
50% 104 190 91
40% 123 263 54
30% 123 263 75
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 166 38
95% 97 166 63
90% 97 166 66
70% 97 166 82
50% 102 205 77
40% 102 205 101
30% 102 205 120
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 182 31
95% 104 190 39
90% 104 190 43
70% 104 190 53
50% 123 263 39
40% 123 264 52
30% 123 264 74
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 189 25
95% 104 189 42
90% 104 189 45
70% 104 189 55
50% 124 267 36
40% 124 267 49
30% 124 269 72
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 194 19
95% 112 200 29
90% 112 200 30
70% 112 200 45
50% 112 200 86
40% 112 200 108
30% 128 237 93
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 193 20
95% 105 194 36
90% 105 194 38
70% 105 194 50
50% 124 235 56
40% 124 236 73
30% 124 236 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.