Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 271 32
95 % 160 271 45
90 % 161 275 47
70 % 161 275 57
50 % 191 421 27
40 % 192 427 37
30 % 219 542 30
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 91 220
95 % 160 271 50
90 % 160 271 55
70 % 160 271 65
50 % 188 411 35
40 % 188 411 48
30 % 213 526 34
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 269 39
95 % 160 270 53
90 % 160 270 58
70 % 160 270 68
50 % 194 421 26
40 % 194 421 38
30 % 219 528 32
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 271 35
95 % 160 271 49
90 % 160 271 54
70 % 160 271 64
50 % 188 415 32
40 % 215 537 19
30 % 215 537 31
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 217 51
95 % 160 278 39
90 % 160 278 44
70 % 188 422 19
50 % 188 432 24
40 % 188 432 35
30 % 188 432 55
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 272 33
95 % 160 272 46
90 % 160 272 51
70 % 160 272 62
50 % 191 419 31
40 % 191 419 43
30 % 216 527 36
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 270 36
95 % 160 270 54
90 % 160 270 59
70 % 160 279 54
50 % 160 279 90
40 % 160 279 113
30 % 160 279 123
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 274 30
95 % 164 279 38
90 % 164 279 43
70 % 164 279 53
50 % 195 428 25
40 % 195 433 34
30 % 195 433 54
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 266 41
95 % 160 271 51
90 % 160 271 56
70 % 160 271 66
50 % 160 278 91
40 % 160 278 114
30 % 191 413 63
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 87 258
95 % 159 265 56
90 % 160 269 60
70 % 160 269 69
50 % 160 269 94
40 % 160 269 117
30 % 160 269 128
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 719
95 % 144 236 65
90 % 144 236 69
70 % 144 236 81
50 % 144 236 111
40 % 144 236 135
30 % 144 236 144
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 274 29
95 % 161 274 42
90 % 161 274 48
70 % 161 274 58
50 % 189 421 28
40 % 189 424 40
30 % 189 424 57
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 219 50
95 % 160 270 52
90 % 160 270 57
70 % 160 270 67
50 % 160 270 93
40 % 160 270 116
30 % 160 270 127
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 261 43
95 % 160 261 59
90 % 160 261 63
70 % 160 261 74
50 % 160 261 98
40 % 160 261 121
30 % 160 261 133
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 271 31
95 % 160 272 43
90 % 160 272 49
70 % 160 272 59
50 % 188 409 36
40 % 188 414 45
30 % 188 414 62
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 235 48
95 % 144 235 66
90 % 144 235 70
70 % 144 235 82
50 % 150 309 84
40 % 150 309 103
30 % 150 309 116
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 264 42
95 % 160 272 44
90 % 160 272 50
70 % 160 272 60
50 % 188 416 29
40 % 188 421 41
30 % 188 421 58
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 271 34
95 % 160 271 48
90 % 160 271 53
70 % 160 271 63
50 % 189 417 30
40 % 189 417 42
30 % 189 419 60
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 276 27
95 % 168 282 37
90 % 168 282 42
70 % 168 282 51
50 % 168 282 88
40 % 168 282 110
30 % 192 355 95
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 275 28
95 % 161 276 41
90 % 161 276 46
70 % 161 276 56
50 % 188 356 66
40 % 188 361 84
30 % 188 361 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.