Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 33
95 % 158 269 46
90 % 159 273 46
70 % 159 273 57
50 % 189 397 28
40 % 190 401 37
30 % 215 508 30
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 91 211
95 % 158 269 51
90 % 158 269 54
70 % 158 269 65
50 % 186 391 36
40 % 186 391 46
30 % 209 496 35
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 267 38
95 % 158 268 54
90 % 158 268 57
70 % 158 268 69
50 % 192 397 27
40 % 192 397 38
30 % 215 496 32
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 36
95 % 158 269 50
90 % 158 269 53
70 % 158 269 64
50 % 186 391 35
40 % 211 495 19
30 % 211 495 33
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 217 50
95 % 158 276 39
90 % 158 276 43
70 % 186 404 22
50 % 186 409 25
40 % 186 409 35
30 % 186 409 55
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 270 34
95 % 158 270 47
90 % 158 270 51
70 % 158 270 61
50 % 189 396 33
40 % 189 396 45
30 % 212 497 36
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 268 37
95 % 158 268 55
90 % 158 268 58
70 % 158 270 62
50 % 158 270 90
40 % 158 270 112
30 % 158 270 123
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 272 30
95 % 162 277 38
90 % 162 277 42
70 % 162 277 53
50 % 193 404 26
40 % 193 407 36
30 % 193 407 56
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 264 39
95 % 158 269 52
90 % 158 269 55
70 % 158 269 66
50 % 158 271 89
40 % 158 271 110
30 % 189 392 64
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 87 245
95 % 157 263 56
90 % 158 267 59
70 % 158 267 70
50 % 158 267 94
40 % 158 267 115
30 % 158 267 127
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 690
95 % 142 234 64
90 % 142 234 68
70 % 142 234 80
50 % 142 234 108
40 % 142 234 133
30 % 142 234 141
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 272 29
95 % 159 272 43
90 % 159 272 48
70 % 159 272 58
50 % 187 396 29
40 % 187 399 40
30 % 187 399 57
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 217 51
95 % 158 268 53
90 % 158 268 56
70 % 158 268 68
50 % 158 268 92
40 % 158 268 113
30 % 158 268 124
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 259 43
95 % 158 259 59
90 % 158 259 63
70 % 158 259 75
50 % 158 259 97
40 % 158 259 120
30 % 158 259 130
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 32
95 % 158 270 44
90 % 158 270 49
70 % 158 270 59
50 % 186 390 34
40 % 186 393 44
30 % 186 393 61
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 233 47
95 % 142 233 65
90 % 142 233 69
70 % 142 233 81
50 % 148 304 84
40 % 148 304 102
30 % 148 304 113
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 262 40
95 % 158 270 45
90 % 158 270 50
70 % 158 270 60
50 % 186 392 32
40 % 186 395 42
30 % 186 395 60
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 35
95 % 158 269 49
90 % 158 269 52
70 % 158 269 63
50 % 187 396 31
40 % 187 396 43
30 % 187 398 59
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 274 27
95 % 166 280 36
90 % 166 280 41
70 % 166 280 52
50 % 166 280 87
40 % 166 280 106
30 % 190 334 90
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 273 28
95 % 159 274 41
90 % 159 274 45
70 % 159 274 56
50 % 186 338 70
40 % 186 341 79
30 % 186 341 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.