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An Information Portal to 107049 Biological Macromolecular Structures

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 196 22
95% 110 196 37
90% 111 200 36
70% 111 200 47
50% 132 276 36
40% 133 278 46
30% 152 331 45
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 90 140
95% 110 196 43
90% 110 196 45
70% 110 196 56
50% 129 270 41
40% 129 270 55
30% 147 322 50
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 194 28
95% 110 195 46
90% 110 195 48
70% 110 195 59
50% 135 276 35
40% 135 276 45
30% 153 327 46
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 196 26
95% 110 196 42
90% 110 196 44
70% 110 196 55
50% 129 270 42
40% 149 326 35
30% 149 326 47
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 165 35
95% 110 203 31
90% 110 203 33
70% 129 282 24
50% 129 282 34
40% 129 282 44
30% 129 282 69
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 197 23
95% 110 197 38
90% 110 197 40
70% 110 197 52
50% 132 275 39
40% 132 275 52
30% 150 327 48
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 195 27
95% 110 195 47
90% 110 195 49
70% 110 195 60
50% 110 195 93
40% 110 195 116
30% 110 195 139
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 199 19
95% 114 204 30
90% 114 204 32
70% 114 204 44
50% 136 283 33
40% 136 283 43
30% 136 283 68
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 191 29
95% 110 196 44
90% 110 196 46
70% 110 196 57
50% 110 196 90
40% 110 196 114
30% 132 273 77
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 80 221
95% 109 190 49
90% 110 194 50
70% 110 194 61
50% 110 194 94
40% 110 194 117
30% 110 194 141
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 499
95% 102 172 70
90% 102 172 74
70% 102 172 88
50% 102 172 125
40% 102 172 146
30% 102 172 165
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 174 47
95% 102 174 69
90% 102 174 73
70% 102 174 87
50% 130 273 38
40% 130 273 50
30% 130 273 73
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 146 54
95% 110 195 45
90% 110 195 47
70% 110 195 58
50% 110 195 92
40% 110 195 115
30% 110 195 138
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 186 32
95% 110 186 51
90% 110 186 54
70% 110 186 66
50% 110 186 111
40% 110 186 134
30% 110 186 152
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 196 24
95% 110 197 35
90% 110 197 38
70% 110 197 50
50% 110 197 89
40% 129 270 54
30% 129 270 76
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 171 48
95% 102 171 73
90% 102 171 76
70% 102 171 90
50% 107 210 77
40% 107 210 101
30% 107 210 122
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 189 30
95% 110 197 36
90% 110 197 39
70% 110 197 51
50% 129 270 40
40% 129 271 53
30% 129 271 75
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 196 25
95% 110 196 40
90% 110 196 42
70% 110 196 54
50% 130 274 37
40% 130 274 49
30% 130 276 71
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 201 17
95% 118 207 29
90% 118 207 31
70% 118 207 42
50% 118 207 82
40% 118 207 108
30% 134 244 91
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 200 18
95% 111 201 33
90% 111 201 35
70% 111 201 46
50% 130 242 55
40% 130 243 71
30% 130 243 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.