Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 256 31
95 % 156 256 42
90 % 157 260 43
70 % 157 260 52
50 % 187 362 29
40 % 188 364 39
30 % 211 443 33
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 91 198
95 % 156 256 46
90 % 156 256 51
70 % 156 256 60
50 % 184 356 36
40 % 184 356 46
30 % 205 433 40
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 254 36
95 % 156 255 49
90 % 156 255 54
70 % 156 255 64
50 % 190 362 28
40 % 190 362 38
30 % 211 436 36
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 256 34
95 % 156 256 45
90 % 156 256 50
70 % 156 256 59
50 % 184 356 35
40 % 207 438 20
30 % 207 439 34
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 208 46
95 % 156 263 36
90 % 156 263 41
70 % 184 367 22
50 % 184 368 27
40 % 184 368 37
30 % 184 368 57
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 257 32
95 % 156 257 43
90 % 156 257 48
70 % 156 257 57
50 % 187 361 32
40 % 187 361 43
30 % 208 437 39
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 255 35
95 % 156 255 50
90 % 156 255 55
70 % 156 256 62
50 % 156 256 88
40 % 156 256 108
30 % 156 256 120
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 259 29
95 % 160 264 35
90 % 160 264 40
70 % 160 264 50
50 % 191 369 26
40 % 191 370 36
30 % 191 370 56
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 251 37
95 % 156 256 47
90 % 156 256 52
70 % 156 256 61
50 % 156 256 87
40 % 156 257 107
30 % 187 359 63
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 87 225
95 % 155 250 51
90 % 156 254 56
70 % 156 254 66
50 % 156 254 90
40 % 156 254 111
30 % 156 254 123
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 616
95 % 140 221 64
90 % 140 221 69
70 % 140 221 79
50 % 140 221 111
40 % 140 221 132
30 % 140 221 143
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 259 27
95 % 157 259 38
90 % 157 259 44
70 % 157 259 53
50 % 185 359 31
40 % 185 359 41
30 % 185 359 59
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 204 48
95 % 156 255 48
90 % 156 255 53
70 % 156 255 63
50 % 156 255 89
40 % 156 255 110
30 % 156 255 122
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 246 39
95 % 156 246 54
90 % 156 246 59
70 % 156 246 69
50 % 156 246 95
40 % 156 246 118
30 % 156 246 131
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 256 30
95 % 156 257 39
90 % 156 257 45
70 % 156 257 54
50 % 184 355 34
40 % 184 356 44
30 % 184 356 62
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 220 45
95 % 140 220 65
90 % 140 220 70
70 % 140 220 80
50 % 146 276 78
40 % 146 276 100
30 % 146 276 112
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 249 38
95 % 156 257 40
90 % 156 257 46
70 % 156 257 55
50 % 184 356 33
40 % 184 357 42
30 % 184 357 61
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 256 33
95 % 156 256 44
90 % 156 256 49
70 % 156 256 58
50 % 185 360 30
40 % 185 360 40
30 % 185 362 58
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 261 25
95 % 164 267 34
90 % 164 267 37
70 % 164 267 46
50 % 164 267 84
40 % 164 267 103
30 % 188 313 77
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 260 26
95 % 157 261 37
90 % 157 261 42
70 % 157 261 51
50 % 184 313 54
40 % 184 314 68
30 % 184 314 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.