Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 32
95 % 158 269 43
90 % 159 273 43
70 % 159 273 53
50 % 189 395 26
40 % 190 399 35
30 % 215 504 28
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 91 204
95 % 158 269 48
90 % 158 269 51
70 % 158 269 61
50 % 186 389 35
40 % 186 389 45
30 % 209 492 34
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 267 37
95 % 158 268 51
90 % 158 268 54
70 % 158 268 65
50 % 192 395 25
40 % 192 395 37
30 % 215 494 30
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 35
95 % 158 269 47
90 % 158 269 50
70 % 158 269 60
50 % 186 389 34
40 % 211 491 18
30 % 211 491 31
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 217 48
95 % 158 276 36
90 % 158 276 40
70 % 186 402 20
50 % 186 407 23
40 % 186 407 33
30 % 186 407 54
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 270 33
95 % 158 270 44
90 % 158 270 48
70 % 158 270 57
50 % 189 394 31
40 % 189 394 43
30 % 212 495 33
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 268 36
95 % 158 268 52
90 % 158 268 55
70 % 158 270 58
50 % 158 270 87
40 % 158 270 108
30 % 158 270 120
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 272 29
95 % 162 277 35
90 % 162 277 39
70 % 162 277 50
50 % 193 402 24
40 % 193 405 34
30 % 193 405 55
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 264 38
95 % 158 269 49
90 % 158 269 52
70 % 158 269 62
50 % 158 271 86
40 % 158 271 106
30 % 189 390 63
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 87 235
95 % 157 263 53
90 % 158 267 56
70 % 158 267 66
50 % 158 267 90
40 % 158 267 111
30 % 158 267 123
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 666
95 % 142 234 62
90 % 142 234 66
70 % 142 234 77
50 % 142 234 103
40 % 142 234 129
30 % 142 234 140
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 272 28
95 % 159 272 40
90 % 159 272 45
70 % 159 272 54
50 % 187 394 28
40 % 187 397 39
30 % 187 397 56
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 217 49
95 % 158 268 50
90 % 158 268 53
70 % 158 268 64
50 % 158 268 89
40 % 158 268 110
30 % 158 268 122
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 259 42
95 % 158 259 56
90 % 158 259 60
70 % 158 259 69
50 % 158 259 94
40 % 158 259 116
30 % 158 259 129
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 31
95 % 158 270 41
90 % 158 270 46
70 % 158 270 55
50 % 186 388 33
40 % 186 391 42
30 % 186 391 61
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 233 45
95 % 142 233 63
90 % 142 233 67
70 % 142 233 78
50 % 148 302 80
40 % 148 302 97
30 % 148 302 113
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 262 39
95 % 158 270 42
90 % 158 270 47
70 % 158 270 56
50 % 186 390 30
40 % 186 393 40
30 % 186 393 59
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 269 34
95 % 158 269 46
90 % 158 269 49
70 % 158 269 59
50 % 187 394 29
40 % 187 394 41
30 % 187 396 58
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 274 26
95 % 166 280 33
90 % 166 280 38
70 % 166 280 49
50 % 166 280 84
40 % 166 280 103
30 % 190 334 88
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 273 27
95 % 159 274 38
90 % 159 274 42
70 % 159 274 52
50 % 186 336 65
40 % 186 339 76
30 % 186 339 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.