Sequence Similarity Clusters for the Entities in PDB 1XNQ

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
Ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 292 29
95 % 174 292 42 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 175 296 43
70 % 175 296 52
50 % 205 454 27
40 % 206 461 39
30 % 236 589 32
Entity #11 | Chains: I
Ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 94 223
95 % 174 292 46 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 174 292 51
70 % 174 292 61
50 % 202 443 34
40 % 202 444 48
30 % 230 573 36
Entity #12 | Chains: J
Ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 290 34
95 % 174 291 49
90 % 174 291 54
70 % 174 291 65
50 % 208 455 25
40 % 208 455 40
30 % 236 572 34
Entity #13 | Chains: K
Ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 292 32
95 % 174 292 45 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 174 292 50
70 % 174 292 60
50 % 202 449 33
40 % 232 584 19
30 % 232 584 33
Entity #14 | Chains: L
Ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 104 220 54
95 % 174 299 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 174 299 41
70 % 202 453 17
50 % 202 466 24
40 % 202 466 38
30 % 202 466 57
Entity #15 | Chains: M
Ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 293 30
95 % 174 293 43 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 174 293 47
70 % 174 293 58
50 % 205 453 32
40 % 205 453 46
30 % 233 573 37
Entity #16 | Chains: N
Ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 291 33
95 % 174 291 50 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 174 291 55
70 % 174 304 49
50 % 174 304 89
40 % 174 304 110
30 % 174 304 122
Entity #17 | Chains: O
Ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 295 27
95 % 178 300 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 178 300 40
70 % 178 300 50
50 % 209 461 26
40 % 209 466 37
30 % 209 466 56
Entity #18 | Chains: P
Ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 287 35
95 % 174 292 47 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 174 292 52
70 % 174 292 62
50 % 174 302 90
40 % 174 308 107
30 % 205 451 64
Entity #19 | Chains: Q
Ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 91 276
95 % 173 285 51 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 174 289 56
70 % 174 289 66
50 % 174 289 94
40 % 174 289 117
30 % 174 289 127
Entity #2 | Chains: X
Anticodon tRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
Ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 51 753
95 % 152 246 65 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 152 246 68
70 % 152 246 84
50 % 152 246 113
40 % 152 246 138
30 % 152 246 143
Entity #21 | Chains: S
Ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 175 295 26
95 % 175 295 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 175 295 44
70 % 175 295 54
50 % 203 455 28
40 % 203 458 42
30 % 203 458 58
Entity #22 | Chains: T
Ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 157 238 47
95 % 174 291 48 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 174 291 53
70 % 174 291 64
50 % 174 291 93
40 % 174 291 116
30 % 174 291 126
Entity #23 | Chains: V
Ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 282 41
95 % 174 282 55 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 174 282 61
70 % 174 282 71
50 % 174 282 98
40 % 174 282 121
30 % 174 282 129
Entity #3 | Chains: W
mRNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
Ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 292 28
95 % 174 293 40 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 174 293 45
70 % 174 293 55
50 % 202 441 35
40 % 202 447 47
30 % 202 447 63
Entity #5 | Chains: C
Ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 245 46
95 % 152 245 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 152 245 69
70 % 152 245 85
50 % 158 320 86
40 % 158 320 104
30 % 158 320 116
Entity #6 | Chains: D
Ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 285 38
95 % 174 293 41 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 174 293 46
70 % 174 293 57
50 % 202 449 29
40 % 202 455 43
30 % 202 455 59
Entity #7 | Chains: E
Ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 292 31
95 % 174 292 44 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 174 292 49
70 % 174 292 59
50 % 203 450 31
40 % 203 450 45
30 % 203 452 61
Entity #8 | Chains: F
Ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 176 297 24
95 % 182 303 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 182 303 39
70 % 182 303 48
50 % 182 303 88
40 % 182 303 109
30 % 206 386 88
Entity #9 | Chains: G
Ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 175 296 25
95 % 175 297 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 175 297 42
70 % 175 297 51
50 % 202 388 60
40 % 202 394 71
30 % 202 394 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures