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Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 255 23
95% 126 255 41
90% 127 259 40
70% 127 259 52
50% 168 369 36
40% 169 371 49
30% 172 408 50
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 113 134
95% 126 255 45
90% 126 255 48
70% 126 255 60
50% 165 363 41
40% 165 363 56
30% 167 399 59
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 252 29
95% 126 254 48
90% 126 254 51
70% 126 254 63
50% 171 369 34
40% 171 369 48
30% 171 374 67
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 255 27
95% 126 255 44
90% 126 255 47
70% 126 255 59
50% 165 363 42
40% 169 403 39
30% 169 403 53
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 224 37
95% 126 262 36
90% 126 262 38
70% 165 375 24
50% 165 375 33
40% 165 375 47
30% 165 375 71
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 256 24
95% 126 256 42
90% 126 256 45
70% 126 256 57
50% 165 365 39
40% 165 365 53
30% 167 401 57
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 254 28
95% 126 254 49
90% 126 254 52
70% 126 254 64
50% 126 254 99
40% 126 254 124
30% 126 254 144
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 258 21
95% 130 263 35
90% 130 263 37
70% 130 263 48
50% 172 376 32
40% 172 376 45
30% 172 376 69
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 250 31
95% 126 255 46
90% 126 255 49
70% 126 255 61
50% 126 255 97
40% 126 255 122
30% 165 363 78
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 92 219
95% 125 249 51
90% 126 253 53
70% 126 253 65
50% 126 253 100
40% 126 253 126
30% 126 253 146
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 463
95% 120 221 64
90% 120 221 68
70% 120 221 81
50% 120 221 116
40% 120 221 144
30% 120 221 166
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 223 38
95% 120 223 63
90% 120 223 67
70% 120 223 80
50% 166 366 38
40% 166 366 52
30% 166 366 75
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 193 43
95% 126 254 47
90% 126 254 50
70% 126 254 62
50% 126 254 98
40% 126 254 123
30% 126 254 143
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 238 34
95% 126 238 55
90% 126 238 59
70% 126 238 71
50% 126 238 110
40% 126 238 133
30% 126 238 153
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 255 25
95% 126 256 39
90% 126 256 43
70% 126 256 55
50% 126 256 96
40% 165 363 55
30% 165 363 77
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 219 39
95% 119 219 66
90% 119 219 70
70% 119 219 83
50% 134 282 81
40% 134 282 101
30% 134 282 123
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 248 32
95% 126 256 40
90% 126 256 44
70% 126 256 56
50% 165 363 40
40% 165 364 54
30% 165 364 76
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 255 26
95% 126 255 43
90% 126 255 46
70% 126 255 58
50% 166 367 37
40% 166 367 51
30% 166 369 72
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 260 18
95% 134 266 34
90% 134 266 36
70% 134 266 47
50% 134 266 88
40% 134 266 112
30% 160 313 95
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 259 20
95% 127 260 37
90% 127 260 39
70% 127 260 51
50% 153 308 57
40% 153 309 74
30% 153 309 97
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.