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Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XNQ
Sequence Clusters for the Sequence Entities in PDB 1XNQ
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 31
95% 127 220 44
90% 128 224 45
70% 128 224 56
50% 151 307 34
40% 152 309 43
30% 171 368 40
Entity #11: Chains: I - Ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 90 177
95% 127 220 48
90% 127 220 52
70% 127 220 63
50% 148 301 42
40% 148 301 52
30% 166 359 48
Entity #12: Chains: J - Ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 218 36
95% 127 219 51
90% 127 219 55
70% 127 219 67
50% 154 307 31
40% 154 307 42
30% 172 363 43
Entity #13: Chains: K - Ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 34
95% 127 220 47
90% 127 220 51
70% 127 220 62
50% 148 301 41
40% 168 364 30
30% 168 365 42
Entity #14: Chains: L - Ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 183 46
95% 127 227 38
90% 127 227 42
70% 148 312 22
50% 148 313 30
40% 148 313 41
30% 148 313 56
Entity #15: Chains: M - Ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 221 32
95% 127 221 45
90% 127 221 49
70% 127 221 60
50% 151 306 38
40% 151 306 50
30% 169 364 46
Entity #16: Chains: N - Ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 219 35
95% 127 219 52
90% 127 219 56
70% 127 220 65
50% 127 220 92
40% 127 220 114
30% 127 220 127
Entity #17: Chains: O - Ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 223 29
95% 131 228 26
90% 131 228 31
70% 131 228 43
50% 155 314 29
40% 155 315 38
30% 155 315 54
Entity #18: Chains: P - Ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 215 37
95% 127 220 49
90% 127 220 53
70% 127 220 64
50% 127 220 91
40% 127 221 112
30% 151 304 70
Entity #19: Chains: Q - Ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 80 224
95% 126 214 56
90% 127 218 58
70% 127 218 69
50% 127 218 94
40% 127 218 116
30% 127 218 129
Entity #2: Chains: X - Anticodon tRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - Ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 49 526
95% 118 194 64
90% 118 194 66
70% 118 194 79
50% 118 194 112
40% 118 194 131
30% 118 194 150
Entity #21: Chains: S - Ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 223 27
95% 128 223 41
90% 128 223 46
70% 128 223 57
50% 149 304 36
40% 149 304 48
30% 149 304 66
Entity #22: Chains: T - Ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 170 49
95% 127 219 50
90% 127 219 54
70% 127 219 66
50% 127 219 93
40% 127 219 115
30% 127 219 128
Entity #23: Chains: V - Ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 210 40
95% 127 210 59
90% 127 210 62
70% 127 210 73
50% 127 210 99
40% 127 210 121
30% 127 210 135
Entity #3: Chains: W - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - Ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 30
95% 127 221 42
90% 127 221 47
70% 127 221 58
50% 148 300 40
40% 148 301 51
30% 148 301 69
Entity #5: Chains: C - Ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 193 45
95% 118 193 65
90% 118 193 67
70% 118 193 80
50% 124 237 76
40% 124 237 101
30% 124 237 118
Entity #6: Chains: D - Ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 213 38
95% 127 221 43
90% 127 221 48
70% 127 221 59
50% 148 301 39
40% 148 302 49
30% 148 302 68
Entity #7: Chains: E - Ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 220 33
95% 127 220 46
90% 127 220 50
70% 127 220 61
50% 149 305 35
40% 149 305 47
30% 149 307 62
Entity #8: Chains: F - Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 225 24
95% 135 231 24
90% 135 231 29
70% 135 231 41
50% 135 231 83
40% 135 231 107
30% 152 270 79
Entity #9: Chains: G - Ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 224 26
95% 128 225 40
90% 128 225 44
70% 128 225 55
50% 148 268 51
40% 148 269 62
30% 148 269 81
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.