Sequence Similarity Clusters for the Entities in PDB 1XN2

Entity #1 | Chains: A,B,C,D
Beta-secretase 1 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 104 272 19
95 % 146 354 14 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 146 354 16
70 % 146 354 24
50 % 148 366 38
40 % 148 366 49
30 % 148 366 67
Entity #2 | Chains: E,F,G,H
OM03-4 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.