Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 239 19
95 % 95 239 31
90 % 95 243 30
70 % 95 243 41
50 % 113 330 31
40 % 114 332 41
30 % 128 401 37
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 90 190
95 % 94 239 35
90 % 94 239 40
70 % 94 239 49
50 % 110 324 39
40 % 110 324 49
30 % 123 392 47
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 237 25
95 % 94 238 38
90 % 94 238 43
70 % 94 238 53
50 % 116 330 30
40 % 116 330 40
30 % 129 396 41
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 239 23
95 % 94 239 34
90 % 94 239 39
70 % 94 239 48
50 % 110 324 38
40 % 125 397 27
30 % 125 398 39
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 194 42
95 % 94 246 22
90 % 94 246 27
70 % 110 335 23
50 % 110 336 29
40 % 110 336 39
30 % 110 336 56
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 240 20
95 % 94 240 32
90 % 94 240 37
70 % 94 240 46
50 % 113 329 35
40 % 113 329 46
30 % 126 397 46
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 238 24
95 % 94 238 39
90 % 94 238 44
70 % 94 239 51
50 % 94 239 82
40 % 94 239 107
30 % 94 239 123
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 242 16
95 % 98 247 21
90 % 98 247 26
70 % 98 247 37
50 % 117 337 27
40 % 117 338 38
30 % 117 338 54
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 234 26
95 % 94 239 36
90 % 94 239 41
70 % 94 239 50
50 % 94 239 81
40 % 94 240 106
30 % 113 327 64
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 84 225
95 % 94 233 40
90 % 94 237 45
70 % 94 237 54
50 % 94 237 87
40 % 94 237 113
30 % 94 237 128
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 49 564
95 % 85 205 63
90 % 85 205 66
70 % 85 205 75
50 % 85 205 109
40 % 85 205 129
30 % 85 205 145
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 242 15
95 % 95 242 26
90 % 95 242 31
70 % 95 242 42
50 % 111 327 34
40 % 111 327 44
30 % 111 327 60
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 188 48
95 % 94 238 37
90 % 94 238 42
70 % 94 238 52
50 % 94 238 83
40 % 94 238 109
30 % 94 238 125
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 229 39
95 % 94 229 54
90 % 94 229 58
70 % 94 229 69
50 % 94 229 96
40 % 94 229 118
30 % 94 229 132
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 239 17
95 % 94 240 27
90 % 94 240 33
70 % 94 240 43
50 % 110 323 37
40 % 110 324 47
30 % 110 324 63
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 204 43
95 % 84 204 64
90 % 84 204 67
70 % 84 204 76
50 % 88 252 68
40 % 88 252 93
30 % 88 252 110
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 232 27
95 % 94 240 28
90 % 94 240 34
70 % 94 240 44
50 % 110 324 36
40 % 110 325 45
30 % 110 325 62
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 239 22
95 % 94 239 33
90 % 94 239 38
70 % 94 239 47
50 % 111 328 33
40 % 111 328 43
30 % 111 330 59
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 244 13
95 % 102 250 20
90 % 102 250 25
70 % 102 250 35
50 % 102 250 70
40 % 102 250 94
30 % 116 289 80
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 243 14
95 % 95 244 25
90 % 95 244 29
70 % 95 244 40
50 % 111 289 50
40 % 111 290 62
30 % 111 290 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.