Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 255 31
95 % 107 255 42
90 % 107 259 43
70 % 107 259 52
50 % 132 361 29
40 % 133 363 39
30 % 147 440 33
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 91 198
95 % 106 255 46
90 % 106 255 51
70 % 106 255 60
50 % 129 355 36
40 % 129 355 46
30 % 142 431 40
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 253 36
95 % 106 254 49
90 % 106 254 54
70 % 106 254 64
50 % 135 361 28
40 % 135 361 38
30 % 148 434 36
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 255 34
95 % 106 255 45
90 % 106 255 50
70 % 106 255 59
50 % 129 355 35
40 % 144 436 20
30 % 144 437 34
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 207 47
95 % 106 262 36
90 % 106 262 41
70 % 129 366 21
50 % 129 367 27
40 % 129 367 37
30 % 129 367 57
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 256 32
95 % 106 256 43
90 % 106 256 48
70 % 106 256 57
50 % 132 360 32
40 % 132 360 44
30 % 145 435 39
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 254 35
95 % 106 254 50
90 % 106 254 55
70 % 106 255 62
50 % 106 255 87
40 % 106 255 108
30 % 106 255 120
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 258 29
95 % 110 263 35
90 % 110 263 40
70 % 110 263 50
50 % 136 368 26
40 % 136 369 36
30 % 136 369 56
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 250 37
95 % 106 255 47
90 % 106 255 52
70 % 106 255 61
50 % 106 255 86
40 % 106 256 107
30 % 132 358 62
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 87 224
95 % 106 249 52
90 % 106 253 56
70 % 106 253 65
50 % 106 253 89
40 % 106 253 111
30 % 106 253 124
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 51 610
95 % 96 220 64
90 % 96 220 69
70 % 96 220 79
50 % 96 220 110
40 % 96 220 132
30 % 96 220 142
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 258 28
95 % 107 258 38
90 % 107 258 44
70 % 107 258 53
50 % 130 358 31
40 % 130 358 41
30 % 130 358 59
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 203 48
95 % 106 254 48
90 % 106 254 53
70 % 106 254 63
50 % 106 254 88
40 % 106 254 109
30 % 106 254 121
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 245 39
95 % 106 245 55
90 % 106 245 60
70 % 106 245 70
50 % 106 245 94
40 % 106 245 118
30 % 106 245 131
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 255 30
95 % 106 256 40
90 % 106 256 46
70 % 106 256 55
50 % 129 354 34
40 % 129 355 45
30 % 129 355 61
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 219 45
95 % 95 219 65
90 % 95 219 70
70 % 95 219 80
50 % 99 275 80
40 % 99 275 100
30 % 99 275 112
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 248 38
95 % 106 256 41
90 % 106 256 47
70 % 106 256 56
50 % 129 355 33
40 % 129 356 43
30 % 129 356 60
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 255 33
95 % 106 255 44
90 % 106 255 49
70 % 106 255 58
50 % 130 359 30
40 % 130 359 40
30 % 130 361 58
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 260 25
95 % 114 266 34
90 % 114 266 37
70 % 114 266 46
50 % 114 266 84
40 % 114 266 103
30 % 135 312 79
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 259 27
95 % 107 260 37
90 % 107 260 42
70 % 107 260 51
50 % 130 312 54
40 % 130 313 68
30 % 130 313 88

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.