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An Information Portal to 107620 Biological Macromolecular Structures

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMQ
Sequence Clusters for the Sequence Entities in PDB 1XMQ
Entity #1: Chains: A - 16s ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S Ribosomal Protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 198 20
95% 73 198 36
90% 73 202 35
70% 73 202 46
50% 90 280 36
40% 91 282 46
30% 105 335 44
Entity #11: Chains: I - 30S Ribosomal Protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 90 156
95% 72 198 41
90% 72 198 43
70% 72 198 55
50% 87 274 41
40% 87 274 54
30% 100 326 51
Entity #12: Chains: J - 30S Ribosomal Protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 196 28
95% 72 197 44
90% 72 197 46
70% 72 197 58
50% 93 280 35
40% 93 280 45
30% 106 331 46
Entity #13: Chains: K - 30S Ribosomal Protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 198 24
95% 72 198 40
90% 72 198 42
70% 72 198 54
50% 87 274 42
40% 102 330 35
30% 102 330 47
Entity #14: Chains: L - 30S Ribosomal Protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 165 35
95% 72 205 31
90% 72 205 33
70% 87 286 24
50% 87 286 34
40% 87 286 44
30% 87 286 69
Entity #15: Chains: M - 30S Ribosomal Protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 199 21
95% 72 199 37
90% 72 199 39
70% 72 199 51
50% 90 279 39
40% 90 279 51
30% 103 331 49
Entity #16: Chains: N - 30S Ribosomal Protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 197 25
95% 72 197 45
90% 72 197 47
70% 72 197 59
50% 72 197 92
40% 72 197 114
30% 72 197 137
Entity #17: Chains: O - 30S Ribosomal Protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 201 19
95% 76 206 30
90% 76 206 32
70% 76 206 43
50% 94 287 33
40% 94 287 43
30% 94 287 68
Entity #18: Chains: P - 30S Ribosomal Protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 193 29
95% 72 198 42
90% 72 198 44
70% 72 198 56
50% 72 198 90
40% 72 198 112
30% 90 277 75
Entity #19: Chains: Q - 30S Ribosomal Protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 80 222
95% 72 192 49
90% 72 196 48
70% 72 196 60
50% 72 196 93
40% 72 196 116
30% 72 196 139
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S Ribosomal Protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 505
95% 67 174 71
90% 67 174 75
70% 67 174 88
50% 67 174 128
40% 67 174 146
30% 67 174 164
Entity #21: Chains: S - 30S Ribosomal Protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 176 45
95% 67 176 67
90% 67 176 70
70% 67 176 83
50% 88 277 38
40% 88 277 48
30% 88 277 72
Entity #22: Chains: T - 30S Ribosomal Protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 148 54
95% 72 197 43
90% 72 197 45
70% 72 197 57
50% 72 197 91
40% 72 197 113
30% 72 197 136
Entity #23: Chains: V - 30S Ribosomal Protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 188 31
95% 72 188 51
90% 72 188 54
70% 72 188 66
50% 72 188 111
40% 72 188 133
30% 72 188 153
Entity #3: Chains: X - Anticodon RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S Ribosomal Protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 198 22
95% 72 199 34
90% 72 199 37
70% 72 199 48
50% 72 199 88
40% 87 274 53
30% 87 274 74
Entity #5: Chains: C - 30S Ribosomal Protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 173 48
95% 66 173 72
90% 66 173 76
70% 66 173 90
50% 69 213 75
40% 69 213 102
30% 69 213 122
Entity #6: Chains: D - 30S Ribosomal Protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 191 30
95% 72 199 35
90% 72 199 38
70% 72 199 49
50% 87 274 40
40% 87 275 52
30% 87 275 73
Entity #7: Chains: E - 30S Ribosomal Protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 198 23
95% 72 198 39
90% 72 198 41
70% 72 198 53
50% 88 278 37
40% 88 278 47
30% 88 280 71
Entity #8: Chains: F - 30S Ribosomal Protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 203 17
95% 80 209 29
90% 80 209 31
70% 80 209 42
50% 80 209 80
40% 80 209 106
30% 94 247 87
Entity #9: Chains: G - 30S Ribosomal Protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 202 18
95% 73 203 32
90% 73 203 34
70% 73 203 45
50% 89 245 53
40% 89 246 70
30% 89 246 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.