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An Information Portal to 110071 Biological Macromolecular Structures

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMQ
Sequence Clusters for the Sequence Entities in PDB 1XMQ
Entity #1: Chains: A - 16s ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S Ribosomal Protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 220 31
95% 84 220 43
90% 84 224 43
70% 84 224 53
50% 101 306 33
40% 102 308 43
30% 116 364 40
Entity #11: Chains: I - 30S Ribosomal Protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 90 166
95% 83 220 47
90% 83 220 51
70% 83 220 61
50% 98 300 43
40% 98 300 52
30% 111 355 48
Entity #12: Chains: J - 30S Ribosomal Protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 218 36
95% 83 219 50
90% 83 219 54
70% 83 219 65
50% 104 306 31
40% 104 306 42
30% 117 359 42
Entity #13: Chains: K - 30S Ribosomal Protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 220 34
95% 83 220 46
90% 83 220 50
70% 83 220 60
50% 98 300 42
40% 113 360 31
30% 113 361 41
Entity #14: Chains: L - 30S Ribosomal Protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 183 46
95% 83 227 27
90% 83 227 32
70% 98 311 21
50% 98 312 30
40% 98 312 41
30% 98 312 56
Entity #15: Chains: M - 30S Ribosomal Protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 221 32
95% 83 221 44
90% 83 221 48
70% 83 221 58
50% 101 305 38
40% 101 305 50
30% 114 360 47
Entity #16: Chains: N - 30S Ribosomal Protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 219 35
95% 83 219 51
90% 83 219 55
70% 83 220 63
50% 83 220 92
40% 83 220 113
30% 83 220 126
Entity #17: Chains: O - 30S Ribosomal Protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 223 28
95% 87 228 25
90% 87 228 29
70% 87 228 41
50% 105 313 28
40% 105 314 39
30% 105 314 55
Entity #18: Chains: P - 30S Ribosomal Protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 215 37
95% 83 220 48
90% 83 220 52
70% 83 220 62
50% 83 220 91
40% 83 221 112
30% 101 303 69
Entity #19: Chains: Q - 30S Ribosomal Protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 80 223
95% 83 214 56
90% 83 218 57
70% 83 218 67
50% 83 218 94
40% 83 218 116
30% 83 218 128
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S Ribosomal Protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 517
95% 78 194 64
90% 78 194 66
70% 78 194 78
50% 78 194 111
40% 78 194 129
30% 78 194 148
Entity #21: Chains: S - 30S Ribosomal Protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 223 27
95% 84 223 40
90% 84 223 45
70% 84 223 55
50% 99 303 35
40% 99 303 47
30% 99 303 65
Entity #22: Chains: T - 30S Ribosomal Protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 170 49
95% 83 219 49
90% 83 219 53
70% 83 219 64
50% 83 219 93
40% 83 219 114
30% 83 219 127
Entity #23: Chains: V - 30S Ribosomal Protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 210 39
95% 83 210 59
90% 83 210 62
70% 83 210 72
50% 83 210 98
40% 83 210 120
30% 83 210 133
Entity #3: Chains: X - Anticodon RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S Ribosomal Protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 220 30
95% 83 221 41
90% 83 221 46
70% 83 221 56
50% 98 299 41
40% 98 300 51
30% 98 300 68
Entity #5: Chains: C - 30S Ribosomal Protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 193 45
95% 77 193 65
90% 77 193 67
70% 77 193 79
50% 80 236 78
40% 80 236 99
30% 80 236 119
Entity #6: Chains: D - 30S Ribosomal Protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 213 38
95% 83 221 42
90% 83 221 47
70% 83 221 57
50% 98 300 39
40% 98 301 49
30% 98 301 67
Entity #7: Chains: E - 30S Ribosomal Protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 220 33
95% 83 220 45
90% 83 220 49
70% 83 220 59
50% 99 304 34
40% 99 304 46
30% 99 306 64
Entity #8: Chains: F - 30S Ribosomal Protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 225 24
95% 91 231 23
90% 91 231 28
70% 91 231 39
50% 91 231 82
40% 91 231 104
30% 105 270 77
Entity #9: Chains: G - 30S Ribosomal Protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 224 26
95% 84 225 38
90% 84 225 42
70% 84 225 52
50% 100 268 50
40% 100 269 60
30% 100 269 80
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.