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An Information Portal to 109274 Biological Macromolecular Structures

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMQ
Sequence Clusters for the Sequence Entities in PDB 1XMQ
Entity #1: Chains: A - 16s ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S Ribosomal Protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 209 19
95% 76 209 37
90% 76 213 36
70% 76 213 45
50% 93 293 36
40% 94 295 46
30% 108 350 42
Entity #11: Chains: I - 30S Ribosomal Protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 90 160
95% 75 209 41
90% 75 209 44
70% 75 209 53
50% 90 287 42
40% 90 287 52
30% 103 341 49
Entity #12: Chains: J - 30S Ribosomal Protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 207 25
95% 75 208 44
90% 75 208 47
70% 75 208 57
50% 96 293 35
40% 96 293 45
30% 109 345 45
Entity #13: Chains: K - 30S Ribosomal Protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 209 23
95% 75 209 40
90% 75 209 43
70% 75 209 52
50% 90 287 41
40% 105 346 32
30% 105 347 44
Entity #14: Chains: L - 30S Ribosomal Protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 172 33
95% 75 216 30
90% 75 216 33
70% 90 298 24
50% 90 299 34
40% 90 299 44
30% 90 299 66
Entity #15: Chains: M - 30S Ribosomal Protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 210 20
95% 75 210 38
90% 75 210 41
70% 75 210 50
50% 93 292 39
40% 93 292 49
30% 106 346 48
Entity #16: Chains: N - 30S Ribosomal Protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 208 24
95% 75 208 45
90% 75 208 48
70% 75 209 55
50% 75 209 82
40% 75 209 108
30% 75 209 125
Entity #17: Chains: O - 30S Ribosomal Protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 212 18
95% 79 217 29
90% 79 217 32
70% 79 217 42
50% 97 300 33
40% 97 301 43
30% 97 301 64
Entity #18: Chains: P - 30S Ribosomal Protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 204 26
95% 75 209 42
90% 75 209 45
70% 75 209 54
50% 75 209 81
40% 75 210 107
30% 93 290 73
Entity #19: Chains: Q - 30S Ribosomal Protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 80 223
95% 75 203 47
90% 75 207 49
70% 75 207 58
50% 75 207 84
40% 75 207 111
30% 75 207 128
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S Ribosomal Protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 516
95% 70 183 53
90% 70 183 56
70% 70 183 70
50% 70 183 115
40% 70 183 138
30% 70 183 156
Entity #21: Chains: S - 30S Ribosomal Protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 212 17
95% 76 212 33
90% 76 212 37
70% 76 212 46
50% 91 290 38
40% 91 290 48
30% 91 290 70
Entity #22: Chains: T - 30S Ribosomal Protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 159 50
95% 75 208 43
90% 75 208 46
70% 75 208 56
50% 75 208 83
40% 75 208 109
30% 75 208 126
Entity #23: Chains: V - 30S Ribosomal Protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 199 31
95% 75 199 49
90% 75 199 51
70% 75 199 62
50% 75 199 94
40% 75 199 117
30% 75 199 141
Entity #3: Chains: X - Anticodon RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S Ribosomal Protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 209 21
95% 75 210 35
90% 75 210 39
70% 75 210 48
50% 90 286 43
40% 90 287 51
30% 90 287 72
Entity #5: Chains: C - 30S Ribosomal Protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 182 35
95% 69 182 54
90% 69 182 57
70% 69 182 71
50% 72 223 76
40% 72 223 101
30% 72 223 120
Entity #6: Chains: D - 30S Ribosomal Protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 202 27
95% 75 210 36
90% 75 210 40
70% 75 210 49
50% 90 287 40
40% 90 288 50
30% 90 288 71
Entity #7: Chains: E - 30S Ribosomal Protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 209 22
95% 75 209 39
90% 75 209 42
70% 75 209 51
50% 91 291 37
40% 91 291 47
30% 91 293 69
Entity #8: Chains: F - 30S Ribosomal Protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 214 15
95% 83 220 26
90% 83 220 31
70% 83 220 41
50% 83 220 78
40% 83 220 102
30% 97 259 82
Entity #9: Chains: G - 30S Ribosomal Protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 213 16
95% 76 214 32
90% 76 214 35
70% 76 214 44
50% 92 257 52
40% 92 258 66
30% 92 258 86
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.