Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 256 31
95 % 107 256 42
90 % 107 260 43
70 % 107 260 52
50 % 132 366 29
40 % 133 368 39
30 % 149 447 31
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 91 198
95 % 106 256 46
90 % 106 256 51
70 % 106 256 60
50 % 129 360 36
40 % 129 360 46
30 % 143 437 40
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 254 36
95 % 106 255 49
90 % 106 255 54
70 % 106 255 64
50 % 135 366 28
40 % 135 366 38
30 % 149 440 36
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 256 34
95 % 106 256 45
90 % 106 256 50
70 % 106 256 59
50 % 129 360 35
40 % 145 442 20
30 % 145 443 33
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 208 46
95 % 106 263 36
90 % 106 263 41
70 % 129 371 21
50 % 129 372 27
40 % 129 372 37
30 % 129 372 57
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 257 32
95 % 106 257 43
90 % 106 257 48
70 % 106 257 57
50 % 132 365 32
40 % 132 365 44
30 % 146 441 39
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 255 35
95 % 106 255 50
90 % 106 255 55
70 % 106 256 62
50 % 106 256 88
40 % 106 256 108
30 % 106 256 120
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 259 29
95 % 110 264 35
90 % 110 264 40
70 % 110 264 50
50 % 136 373 26
40 % 136 374 36
30 % 136 374 56
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 251 37
95 % 106 256 47
90 % 106 256 52
70 % 106 256 61
50 % 106 256 87
40 % 106 257 107
30 % 132 363 63
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 87 225
95 % 106 250 51
90 % 106 254 56
70 % 106 254 66
50 % 106 254 90
40 % 106 254 112
30 % 106 254 124
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 51 616
95 % 96 221 64
90 % 96 221 69
70 % 96 221 79
50 % 96 221 111
40 % 96 221 132
30 % 96 221 143
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 259 27
95 % 107 259 38
90 % 107 259 44
70 % 107 259 53
50 % 130 363 31
40 % 130 363 42
30 % 130 363 59
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 204 48
95 % 106 255 48
90 % 106 255 53
70 % 106 255 63
50 % 106 255 89
40 % 106 255 111
30 % 106 255 123
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 246 39
95 % 106 246 54
90 % 106 246 59
70 % 106 246 69
50 % 106 246 96
40 % 106 246 119
30 % 106 246 133
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 256 30
95 % 106 257 39
90 % 106 257 45
70 % 106 257 54
50 % 129 359 34
40 % 129 360 45
30 % 129 360 61
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 220 45
95 % 95 220 65
90 % 95 220 70
70 % 95 220 80
50 % 99 280 77
40 % 99 280 99
30 % 99 280 112
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 249 38
95 % 106 257 40
90 % 106 257 46
70 % 106 257 55
50 % 129 360 33
40 % 129 361 43
30 % 129 361 60
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 256 33
95 % 106 256 44
90 % 106 256 49
70 % 106 256 58
50 % 130 364 30
40 % 130 364 41
30 % 130 366 58
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 261 25
95 % 114 267 34
90 % 114 267 37
70 % 114 267 46
50 % 114 267 84
40 % 114 267 103
30 % 135 313 82
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 260 26
95 % 107 261 37
90 % 107 261 42
70 % 107 261 51
50 % 130 313 56
40 % 130 314 74
30 % 130 314 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.