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Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMQ
Sequence Clusters for the Sequence Entities in PDB 1XMQ
Entity #1: Chains: A - 16s ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S Ribosomal Protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 255 23
95% 76 255 41
90% 76 259 40
70% 76 259 52
50% 108 369 36
40% 109 371 48
30% 112 408 50
Entity #11: Chains: I - 30S Ribosomal Protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 113 133
95% 75 255 45
90% 75 255 48
70% 75 255 60
50% 105 363 41
40% 105 363 56
30% 107 399 58
Entity #12: Chains: J - 30S Ribosomal Protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 252 29
95% 75 254 48
90% 75 254 51
70% 75 254 63
50% 111 369 34
40% 111 369 47
30% 111 374 66
Entity #13: Chains: K - 30S Ribosomal Protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 255 27
95% 75 255 44
90% 75 255 47
70% 75 255 59
50% 105 363 42
40% 109 403 39
30% 109 403 53
Entity #14: Chains: L - 30S Ribosomal Protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 224 37
95% 75 262 36
90% 75 262 38
70% 105 375 24
50% 105 375 33
40% 105 375 46
30% 105 375 71
Entity #15: Chains: M - 30S Ribosomal Protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 256 24
95% 75 256 42
90% 75 256 45
70% 75 256 57
50% 105 365 39
40% 105 365 53
30% 107 401 55
Entity #16: Chains: N - 30S Ribosomal Protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 254 28
95% 75 254 49
90% 75 254 52
70% 75 254 64
50% 75 254 97
40% 75 254 122
30% 75 254 144
Entity #17: Chains: O - 30S Ribosomal Protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 258 21
95% 79 263 35
90% 79 263 37
70% 79 263 48
50% 112 376 32
40% 112 376 44
30% 112 376 69
Entity #18: Chains: P - 30S Ribosomal Protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 250 30
95% 75 255 46
90% 75 255 49
70% 75 255 61
50% 75 255 95
40% 75 255 120
30% 105 363 78
Entity #19: Chains: Q - 30S Ribosomal Protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 92 218
95% 75 249 51
90% 75 253 53
70% 75 253 65
50% 75 253 98
40% 75 253 124
30% 75 253 146
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S Ribosomal Protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 460
95% 70 221 64
90% 70 221 68
70% 70 221 81
50% 70 221 116
40% 70 221 144
30% 70 221 166
Entity #21: Chains: S - 30S Ribosomal Protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 223 38
95% 70 223 63
90% 70 223 67
70% 70 223 80
50% 106 366 38
40% 106 366 52
30% 106 366 74
Entity #22: Chains: T - 30S Ribosomal Protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 193 43
95% 75 254 47
90% 75 254 50
70% 75 254 62
50% 75 254 96
40% 75 254 121
30% 75 254 143
Entity #23: Chains: V - 30S Ribosomal Protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 238 34
95% 75 238 55
90% 75 238 59
70% 75 238 71
50% 75 238 110
40% 75 238 133
30% 75 238 153
Entity #3: Chains: X - Anticodon RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S Ribosomal Protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 255 25
95% 75 256 39
90% 75 256 43
70% 75 256 55
50% 75 256 94
40% 105 363 55
30% 105 363 77
Entity #5: Chains: C - 30S Ribosomal Protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 219 39
95% 69 219 66
90% 69 219 70
70% 69 219 83
50% 81 282 81
40% 81 282 101
30% 81 282 123
Entity #6: Chains: D - 30S Ribosomal Protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 248 32
95% 75 256 40
90% 75 256 44
70% 75 256 56
50% 105 363 40
40% 105 364 54
30% 105 364 75
Entity #7: Chains: E - 30S Ribosomal Protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 255 26
95% 75 255 43
90% 75 255 46
70% 75 255 58
50% 106 367 37
40% 106 367 51
30% 106 369 72
Entity #8: Chains: F - 30S Ribosomal Protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 260 18
95% 83 266 34
90% 83 266 36
70% 83 266 47
50% 83 266 88
40% 83 266 110
30% 103 313 94
Entity #9: Chains: G - 30S Ribosomal Protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 259 20
95% 76 260 37
90% 76 260 39
70% 76 260 50
50% 95 308 57
40% 95 309 73
30% 95 309 97
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.