Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 32
95 % 108 269 42
90 % 108 273 41
70 % 108 273 51
50 % 133 385 28
40 % 134 387 38
30 % 150 483 28
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 91 200
95 % 107 269 47
90 % 107 269 50
70 % 107 269 59
50 % 130 379 36
40 % 130 379 45
30 % 144 473 36
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 267 37
95 % 107 268 50
90 % 107 268 53
70 % 107 268 64
50 % 136 385 26
40 % 136 385 37
30 % 150 476 29
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 269 35
95 % 107 269 46
90 % 107 269 49
70 % 107 269 58
50 % 130 379 35
40 % 146 470 19
30 % 146 471 32
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 217 47
95 % 107 276 35
90 % 107 276 39
70 % 130 390 21
50 % 130 391 25
40 % 130 391 36
30 % 130 391 55
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 270 33
95 % 107 270 43
90 % 107 270 47
70 % 107 270 56
50 % 133 384 31
40 % 133 384 43
30 % 147 477 35
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 268 36
95 % 107 268 51
90 % 107 268 54
70 % 107 269 61
50 % 107 269 87
40 % 107 269 107
30 % 107 269 117
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 272 28
95 % 111 277 34
90 % 111 277 38
70 % 111 277 49
50 % 137 392 23
40 % 137 393 35
30 % 137 393 53
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 264 38
95 % 107 269 48
90 % 107 269 51
70 % 107 269 60
50 % 107 269 86
40 % 107 270 106
30 % 133 382 62
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 87 232
95 % 107 263 52
90 % 107 267 55
70 % 107 267 65
50 % 107 267 90
40 % 107 267 109
30 % 107 267 119
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 51 635
95 % 97 234 62
90 % 97 234 66
70 % 97 234 77
50 % 97 234 103
40 % 97 234 129
30 % 97 234 139
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 272 27
95 % 108 272 39
90 % 108 272 44
70 % 108 272 53
50 % 131 382 30
40 % 131 382 41
30 % 131 382 59
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 217 48
95 % 107 268 49
90 % 107 268 52
70 % 107 268 63
50 % 107 268 89
40 % 107 268 108
30 % 107 268 118
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 259 41
95 % 107 259 54
90 % 107 259 58
70 % 107 259 68
50 % 107 259 93
40 % 107 259 115
30 % 107 259 128
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 269 31
95 % 107 270 40
90 % 107 270 45
70 % 107 270 54
50 % 130 378 34
40 % 130 379 44
30 % 130 379 61
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 233 44
95 % 96 233 63
90 % 96 233 67
70 % 96 233 78
50 % 100 293 78
40 % 100 293 96
30 % 100 293 113
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 262 39
95 % 107 270 41
90 % 107 270 46
70 % 107 270 55
50 % 130 379 32
40 % 130 380 42
30 % 130 380 60
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 269 34
95 % 107 269 45
90 % 107 269 48
70 % 107 269 57
50 % 131 383 29
40 % 131 383 40
30 % 131 385 58
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 274 24
95 % 115 280 32
90 % 115 280 37
70 % 115 280 48
50 % 115 280 83
40 % 115 280 102
30 % 136 332 78
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 273 26
95 % 108 274 36
90 % 108 274 40
70 % 108 274 50
50 % 131 332 59
40 % 131 333 72
30 % 131 333 88

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.