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An Information Portal to 105339 Biological Macromolecular Structures

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMQ
Sequence Clusters for the Sequence Entities in PDB 1XMQ
Entity #1: Chains: A - 16s ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S Ribosomal Protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 189 22
95% 67 189 40
90% 67 193 39
70% 67 193 51
50% 83 269 35
40% 84 271 46
30% 98 321 44
Entity #11: Chains: I - 30S Ribosomal Protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 87 159
95% 66 189 44
90% 66 189 47
70% 66 189 57
50% 80 263 40
40% 80 263 55
30% 93 312 51
Entity #12: Chains: J - 30S Ribosomal Protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 187 28
95% 66 188 47
90% 66 188 50
70% 66 188 60
50% 86 269 34
40% 86 269 45
30% 86 274 65
Entity #13: Chains: K - 30S Ribosomal Protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 189 26
95% 66 189 43
90% 66 189 46
70% 66 189 56
50% 80 263 41
40% 95 316 35
30% 95 316 45
Entity #14: Chains: L - 30S Ribosomal Protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 158 35
95% 66 196 35
90% 66 196 37
70% 80 275 24
50% 80 275 33
40% 80 275 44
30% 80 275 69
Entity #15: Chains: M - 30S Ribosomal Protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 190 23
95% 66 190 41
90% 66 190 44
70% 66 190 54
50% 83 268 38
40% 83 268 51
30% 96 317 48
Entity #16: Chains: N - 30S Ribosomal Protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 188 27
95% 66 188 48
90% 66 188 51
70% 66 188 61
50% 66 188 94
40% 66 188 119
30% 66 188 142
Entity #17: Chains: O - 30S Ribosomal Protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 192 21
95% 70 197 33
90% 70 197 35
70% 70 197 47
50% 87 276 32
40% 87 276 43
30% 87 276 66
Entity #18: Chains: P - 30S Ribosomal Protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 184 29
95% 66 189 45
90% 66 189 48
70% 66 189 58
50% 66 189 92
40% 66 189 117
30% 83 266 76
Entity #19: Chains: Q - 30S Ribosomal Protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 79 222
95% 66 183 49
90% 66 187 52
70% 66 187 62
50% 66 187 95
40% 66 187 120
30% 66 187 143
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S Ribosomal Protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 491
95% 61 168 61
90% 61 168 64
70% 61 168 80
50% 61 168 117
40% 61 168 139
30% 61 168 161
Entity #21: Chains: S - 30S Ribosomal Protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 170 37
95% 61 170 59
90% 61 170 63
70% 61 170 78
50% 81 266 37
40% 81 266 50
30% 81 266 73
Entity #22: Chains: T - 30S Ribosomal Protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 140 42
95% 66 188 46
90% 66 188 49
70% 66 188 59
50% 66 188 93
40% 66 188 118
30% 66 188 141
Entity #23: Chains: V - 30S Ribosomal Protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 179 34
95% 66 179 54
90% 66 179 56
70% 66 179 69
50% 66 179 105
40% 66 179 132
30% 66 179 151
Entity #3: Chains: X - Anticodon RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S Ribosomal Protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 189 24
95% 66 190 38
90% 66 190 42
70% 66 190 52
50% 66 190 91
40% 80 263 54
30% 80 263 75
Entity #5: Chains: C - 30S Ribosomal Protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 166 38
95% 60 166 63
90% 60 166 66
70% 60 166 82
50% 63 205 77
40% 63 205 101
30% 63 205 120
Entity #6: Chains: D - 30S Ribosomal Protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 182 31
95% 66 190 39
90% 66 190 43
70% 66 190 53
50% 80 263 39
40% 80 264 52
30% 80 264 74
Entity #7: Chains: E - 30S Ribosomal Protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 189 25
95% 66 189 42
90% 66 189 45
70% 66 189 55
50% 81 267 36
40% 81 267 49
30% 81 269 72
Entity #8: Chains: F - 30S Ribosomal Protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 194 19
95% 74 200 29
90% 74 200 30
70% 74 200 45
50% 74 200 86
40% 74 200 108
30% 87 237 93
Entity #9: Chains: G - 30S Ribosomal Protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 193 20
95% 67 194 36
90% 67 194 38
70% 67 194 50
50% 82 235 56
40% 82 236 73
30% 82 236 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.