Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 254 29
95 % 107 254 40
90 % 107 258 42
70 % 107 258 51
50 % 125 348 29
40 % 126 350 39
30 % 140 425 33
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 91 192
95 % 106 254 45
90 % 106 254 50
70 % 106 254 59
50 % 122 342 37
40 % 122 342 48
30 % 135 416 42
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 252 35
95 % 106 253 48
90 % 106 253 53
70 % 106 253 63
50 % 128 348 28
40 % 128 348 38
30 % 141 420 36
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 254 33
95 % 106 254 44
90 % 106 254 49
70 % 106 254 58
50 % 122 342 36
40 % 137 421 22
30 % 137 422 35
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 206 45
95 % 106 261 35
90 % 106 261 39
70 % 122 353 23
50 % 122 354 27
40 % 122 354 37
30 % 122 354 56
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 255 30
95 % 106 255 41
90 % 106 255 46
70 % 106 255 55
50 % 125 347 33
40 % 125 347 45
30 % 138 421 41
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 253 34
95 % 106 253 49
90 % 106 253 54
70 % 106 254 61
50 % 106 254 86
40 % 106 254 106
30 % 106 254 119
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 257 27
95 % 110 262 34
90 % 110 262 38
70 % 110 262 49
50 % 129 355 26
40 % 129 356 36
30 % 129 356 55
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 249 36
95 % 106 254 46
90 % 106 254 51
70 % 106 254 60
50 % 106 254 85
40 % 106 255 105
30 % 125 345 63
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 87 223
95 % 106 248 50
90 % 106 252 55
70 % 106 252 64
50 % 106 252 88
40 % 106 252 108
30 % 106 252 121
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 51 598
95 % 96 219 63
90 % 96 219 68
70 % 96 219 78
50 % 96 219 108
40 % 96 219 129
30 % 96 219 142
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 257 26
95 % 107 257 37
90 % 107 257 43
70 % 107 257 52
50 % 123 345 31
40 % 123 345 42
30 % 123 345 60
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 202 47
95 % 106 253 47
90 % 106 253 52
70 % 106 253 62
50 % 106 253 87
40 % 106 253 107
30 % 106 253 120
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 244 38
95 % 106 244 54
90 % 106 244 57
70 % 106 244 68
50 % 106 244 92
40 % 106 244 114
30 % 106 244 128
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 254 28
95 % 106 255 38
90 % 106 255 44
70 % 106 255 53
50 % 122 341 35
40 % 122 342 47
30 % 122 342 62
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 218 44
95 % 95 218 64
90 % 95 218 69
70 % 95 218 79
50 % 99 269 79
40 % 99 269 97
30 % 99 269 112
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 247 37
95 % 106 255 39
90 % 106 255 45
70 % 106 255 54
50 % 122 342 34
40 % 122 343 44
30 % 122 343 61
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 254 32
95 % 106 254 43
90 % 106 254 48
70 % 106 254 57
50 % 123 346 30
40 % 123 346 41
30 % 123 348 57
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 259 24
95 % 114 265 33
90 % 114 265 36
70 % 114 265 44
50 % 114 265 82
40 % 114 265 100
30 % 128 304 78
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 258 25
95 % 107 259 36
90 % 107 259 41
70 % 107 259 50
50 % 123 304 51
40 % 123 305 63
30 % 123 305 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.