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An Information Portal to 108124 Biological Macromolecular Structures

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMQ
Sequence Clusters for the Sequence Entities in PDB 1XMQ
Entity #1: Chains: A - 16s ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S Ribosomal Protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 199 21
95% 73 199 37
90% 73 203 35
70% 73 203 45
50% 90 282 36
40% 91 284 46
30% 105 337 44
Entity #11: Chains: I - 30S Ribosomal Protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 90 158
95% 72 199 41
90% 72 199 43
70% 72 199 55
50% 87 276 41
40% 87 276 54
30% 100 328 50
Entity #12: Chains: J - 30S Ribosomal Protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 197 29
95% 72 198 45
90% 72 198 47
70% 72 198 59
50% 93 282 35
40% 93 282 45
30% 106 333 45
Entity #13: Chains: K - 30S Ribosomal Protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 199 25
95% 72 199 40
90% 72 199 42
70% 72 199 54
50% 87 276 42
40% 102 332 35
30% 102 332 46
Entity #14: Chains: L - 30S Ribosomal Protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 166 36
95% 72 206 31
90% 72 206 33
70% 87 288 24
50% 87 288 34
40% 87 288 44
30% 87 288 69
Entity #15: Chains: M - 30S Ribosomal Protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 200 22
95% 72 200 38
90% 72 200 40
70% 72 200 51
50% 90 281 39
40% 90 281 50
30% 103 333 49
Entity #16: Chains: N - 30S Ribosomal Protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 198 26
95% 72 198 46
90% 72 198 48
70% 72 198 60
50% 72 198 92
40% 72 198 114
30% 72 198 137
Entity #17: Chains: O - 30S Ribosomal Protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 202 20
95% 76 207 30
90% 76 207 32
70% 76 207 43
50% 94 289 33
40% 94 289 43
30% 94 289 67
Entity #18: Chains: P - 30S Ribosomal Protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 194 30
95% 72 199 42
90% 72 199 44
70% 72 199 56
50% 72 199 89
40% 72 199 112
30% 90 279 76
Entity #19: Chains: Q - 30S Ribosomal Protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 80 222
95% 72 193 50
90% 72 197 49
70% 72 197 61
50% 72 197 93
40% 72 197 116
30% 72 197 138
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S Ribosomal Protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 507
95% 67 174 71
90% 67 174 75
70% 67 174 88
50% 67 174 128
40% 67 174 146
30% 67 174 164
Entity #21: Chains: S - 30S Ribosomal Protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 202 19
95% 73 202 33
90% 73 202 36
70% 73 202 47
50% 88 279 38
40% 88 279 49
30% 88 279 73
Entity #22: Chains: T - 30S Ribosomal Protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 149 54
95% 72 198 44
90% 72 198 46
70% 72 198 58
50% 72 198 91
40% 72 198 113
30% 72 198 136
Entity #23: Chains: V - 30S Ribosomal Protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 189 32
95% 72 189 52
90% 72 189 55
70% 72 189 67
50% 72 189 111
40% 72 189 134
30% 72 189 153
Entity #3: Chains: X - Anticodon RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S Ribosomal Protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 199 23
95% 72 200 35
90% 72 200 38
70% 72 200 48
50% 72 200 88
40% 87 276 53
30% 87 276 75
Entity #5: Chains: C - 30S Ribosomal Protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 173 48
95% 66 173 72
90% 66 173 76
70% 66 173 90
50% 69 214 76
40% 69 214 102
30% 69 214 122
Entity #6: Chains: D - 30S Ribosomal Protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 192 31
95% 72 200 36
90% 72 200 39
70% 72 200 49
50% 87 276 40
40% 87 277 51
30% 87 277 74
Entity #7: Chains: E - 30S Ribosomal Protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 199 24
95% 72 199 39
90% 72 199 41
70% 72 199 52
50% 88 280 37
40% 88 280 48
30% 88 282 72
Entity #8: Chains: F - 30S Ribosomal Protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 204 17
95% 80 210 29
90% 80 210 31
70% 80 210 42
50% 80 210 82
40% 80 210 107
30% 94 248 87
Entity #9: Chains: G - 30S Ribosomal Protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 203 18
95% 73 204 32
90% 73 204 34
70% 73 204 44
50% 89 246 53
40% 89 247 70
30% 89 247 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.