Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 247 30
95 % 103 247 41
90 % 103 251 43
70 % 103 251 52
50 % 121 341 31
40 % 122 343 40
30 % 136 412 39
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 90 195
95 % 102 247 45
90 % 102 247 50
70 % 102 247 60
50 % 118 335 39
40 % 118 335 48
30 % 131 403 45
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 245 35
95 % 102 246 48
90 % 102 246 53
70 % 102 246 64
50 % 124 341 29
40 % 124 341 39
30 % 137 407 41
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 247 33
95 % 102 247 44
90 % 102 247 49
70 % 102 247 59
50 % 118 335 38
40 % 133 408 26
30 % 133 409 40
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 200 46
95 % 102 254 36
90 % 102 254 41
70 % 118 346 23
50 % 118 347 28
40 % 118 347 38
30 % 118 347 57
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 248 31
95 % 102 248 42
90 % 102 248 47
70 % 102 248 57
50 % 121 340 34
40 % 121 340 46
30 % 134 408 44
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 246 34
95 % 102 246 49
90 % 102 246 54
70 % 102 247 62
50 % 102 247 87
40 % 102 247 109
30 % 102 247 120
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 250 28
95 % 106 255 34
90 % 106 255 39
70 % 106 255 49
50 % 125 348 26
40 % 125 349 37
30 % 125 349 56
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 242 36
95 % 102 247 46
90 % 102 247 51
70 % 102 247 61
50 % 102 247 86
40 % 102 248 107
30 % 121 338 62
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 84 229
95 % 102 241 50
90 % 102 245 55
70 % 102 245 65
50 % 102 245 89
40 % 102 245 111
30 % 102 245 122
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 49 587
95 % 92 212 65
90 % 92 212 68
70 % 92 212 79
50 % 92 212 110
40 % 92 212 131
30 % 92 212 143
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 250 27
95 % 103 250 38
90 % 103 250 44
70 % 103 250 53
50 % 119 338 33
40 % 119 338 44
30 % 119 338 59
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 196 47
95 % 102 246 47
90 % 102 246 52
70 % 102 246 63
50 % 102 246 88
40 % 102 246 110
30 % 102 246 121
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 237 40
95 % 102 237 57
90 % 102 237 60
70 % 102 237 70
50 % 102 237 95
40 % 102 237 117
30 % 102 237 131
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 247 29
95 % 102 248 39
90 % 102 248 45
70 % 102 248 54
50 % 118 334 37
40 % 118 335 47
30 % 118 335 61
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 211 44
95 % 91 211 66
90 % 91 211 69
70 % 91 211 80
50 % 95 262 82
40 % 95 262 100
30 % 95 262 116
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 240 37
95 % 102 248 40
90 % 102 248 46
70 % 102 248 55
50 % 118 335 35
40 % 118 336 45
30 % 118 336 60
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 247 32
95 % 102 247 43
90 % 102 247 48
70 % 102 247 58
50 % 119 339 32
40 % 119 339 43
30 % 119 341 58
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 252 25
95 % 110 258 33
90 % 110 258 37
70 % 110 258 48
50 % 110 258 84
40 % 110 258 103
30 % 124 297 80
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 251 26
95 % 103 252 37
90 % 103 252 42
70 % 103 252 51
50 % 119 297 51
40 % 119 298 63
30 % 119 298 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.