Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 292 29
95 % 120 292 42 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 120 296 43
70 % 120 296 52
50 % 145 454 27
40 % 146 461 39
30 % 163 589 32
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 94 223
95 % 119 292 46 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 119 292 51
70 % 119 292 61
50 % 142 443 34
40 % 142 444 48
30 % 157 573 36
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 290 34
95 % 119 291 49 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 119 291 54
70 % 119 291 65
50 % 148 455 25
40 % 148 455 40
30 % 163 572 34
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 292 32
95 % 119 292 45 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 119 292 50
70 % 119 292 60
50 % 142 449 33
40 % 159 584 19
30 % 159 584 33
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 68 220 54
95 % 119 299 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 119 299 41
70 % 142 453 17
50 % 142 466 24
40 % 142 466 38
30 % 142 466 57
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 293 30
95 % 119 293 43 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 119 293 47
70 % 119 293 58
50 % 145 453 32
40 % 145 453 46
30 % 160 573 37
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 291 33
95 % 119 291 50
90 % 119 291 55
70 % 119 304 49
50 % 119 304 89
40 % 119 304 110
30 % 119 304 122
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 295 27
95 % 123 300 36
90 % 123 300 40
70 % 123 300 50
50 % 149 461 26
40 % 149 466 37
30 % 149 466 56
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 287 35
95 % 119 292 47 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 119 292 52
70 % 119 292 62
50 % 119 302 90
40 % 119 308 107
30 % 145 451 64
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 91 276
95 % 119 285 51 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 119 289 56
70 % 119 289 66
50 % 119 289 94
40 % 119 289 117
30 % 119 289 127
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 51 753
95 % 106 246 65
90 % 106 246 68
70 % 106 246 84
50 % 106 246 113
40 % 106 246 138
30 % 106 246 143
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 295 26
95 % 120 295 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 120 295 44
70 % 120 295 54
50 % 143 455 28
40 % 143 458 42
30 % 143 458 58
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 238 47
95 % 119 291 48 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 119 291 53
70 % 119 291 64
50 % 119 291 93
40 % 119 291 116
30 % 119 291 126
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 282 41
95 % 119 282 55 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 119 282 61
70 % 119 282 71
50 % 119 282 98
40 % 119 282 121
30 % 119 282 129
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 292 28
95 % 119 293 40
90 % 119 293 45
70 % 119 293 55
50 % 142 441 35
40 % 142 447 47
30 % 142 447 63
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 105 245 46
95 % 105 245 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 105 245 69
70 % 105 245 85
50 % 109 320 86
40 % 109 320 104
30 % 109 320 116
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 118 285 38
95 % 119 293 41 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 119 293 46
70 % 119 293 57
50 % 142 449 29
40 % 142 455 43
30 % 142 455 59
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 292 31
95 % 119 292 44 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 119 292 49
70 % 119 292 59
50 % 143 450 31
40 % 143 450 45
30 % 143 452 61
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 297 24
95 % 127 303 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 127 303 39
70 % 127 303 48
50 % 127 303 88
40 % 127 303 109
30 % 148 386 88
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 296 25
95 % 120 297 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 120 297 42
70 % 120 297 51
50 % 143 388 60
40 % 143 394 71
30 % 143 394 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures