Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 270 32
95 % 109 270 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 109 274 47
70 % 109 274 57
50 % 134 419 27
40 % 135 425 37
30 % 152 538 30
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 91 214
95 % 108 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 108 270 55
70 % 108 270 65
50 % 131 410 35
40 % 131 410 48
30 % 146 520 35
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 268 39
95 % 108 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 108 269 58
70 % 108 269 68
50 % 137 419 26
40 % 137 419 38
30 % 152 525 31
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 270 35
95 % 108 270 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 108 270 54
70 % 108 270 64
50 % 131 413 32
40 % 148 525 19
30 % 148 525 32
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 67 217 51
95 % 108 277 40 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 108 277 45
70 % 131 420 19
50 % 131 430 24
40 % 131 430 36
30 % 131 430 55
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 271 33
95 % 108 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 108 271 52
70 % 108 271 62
50 % 134 417 31
40 % 134 417 46
30 % 149 523 34
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 269 38
95 % 108 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 108 269 59
70 % 108 277 55
50 % 108 277 91
40 % 108 277 115
30 % 108 277 123
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 273 30
95 % 112 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 112 278 43
70 % 112 278 53
50 % 138 426 25
40 % 138 431 35
30 % 138 431 54
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 265 41
95 % 108 270 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 108 270 56
70 % 108 270 66
50 % 108 277 90
40 % 108 277 114
30 % 134 412 63
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 87 253
95 % 108 264 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 108 268 60
70 % 108 268 69
50 % 108 268 94
40 % 108 268 118
30 % 108 268 128
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 51 715
95 % 98 235 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 98 235 70
70 % 98 235 82
50 % 98 235 111
40 % 98 235 135
30 % 98 235 143
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 273 29
95 % 109 273 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 109 273 48
70 % 109 273 59
50 % 132 419 28
40 % 132 422 40
30 % 132 422 56
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 218 50
95 % 108 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 108 269 57
70 % 108 269 67
50 % 108 269 93
40 % 108 269 116
30 % 108 269 127
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 260 43
95 % 108 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 108 260 63
70 % 108 260 74
50 % 108 260 98
40 % 108 260 121
30 % 108 260 133
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 270 31
95 % 108 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 108 271 50
70 % 108 271 60
50 % 131 408 36
40 % 131 413 45
30 % 131 413 62
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 234 48
95 % 97 234 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 97 234 71
70 % 97 234 83
50 % 101 308 84
40 % 101 308 103
30 % 101 308 116
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 107 263 42
95 % 108 271 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 108 271 51
70 % 108 271 61
50 % 131 414 30
40 % 131 419 41
30 % 131 419 57
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 270 34
95 % 108 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 108 270 53
70 % 108 270 63
50 % 132 416 29
40 % 132 416 42
30 % 132 418 61
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 275 27
95 % 116 281 37
90 % 116 281 42
70 % 116 281 51
50 % 116 281 88
40 % 116 281 110
30 % 137 353 93
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 274 28
95 % 109 275 41
90 % 109 275 46
70 % 109 275 56
50 % 132 354 68
40 % 132 359 85
30 % 132 359 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.