Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 295 35
95 % 121 295 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 121 299 43
70 % 121 299 54
50 % 146 463 27
40 % 164 607 18
30 % 164 607 32
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 96 231
95 % 120 295 47 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 120 295 51
70 % 120 295 63
50 % 143 452 35
40 % 143 453 49
30 % 158 589 35
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 294 40
95 % 120 294 49 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 120 294 53
70 % 120 294 64
50 % 149 464 25
40 % 164 585 20
30 % 164 587 34
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 295 37
95 % 120 295 46 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 120 295 50
70 % 120 295 62
50 % 143 458 32
40 % 160 594 19
30 % 160 594 33
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 102 263 49
95 % 120 302 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 120 302 41
70 % 143 472 15
50 % 143 475 24
40 % 143 475 38
30 % 143 475 56
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 296 34
95 % 120 296 42 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 120 296 47
70 % 120 296 59
50 % 146 462 30
40 % 146 462 43
30 % 161 591 37
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 294 39
95 % 120 294 48 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 120 294 52
70 % 120 298 56
50 % 120 307 92
40 % 120 307 114
30 % 120 307 126
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 300 27
95 % 124 303 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 124 303 40
70 % 124 303 52
50 % 150 470 26
40 % 150 475 37
30 % 150 475 55
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 290 42
95 % 120 295 44 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 120 295 48
70 % 120 295 60
50 % 120 305 93
40 % 146 460 46
30 % 146 460 63
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 266 46
95 % 120 292 51 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 120 292 55
70 % 120 292 68
50 % 120 292 96
40 % 120 292 118
30 % 120 292 131
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 107 243 54
95 % 107 249 64 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 107 249 68
70 % 107 249 86
50 % 107 249 117
40 % 107 249 139
30 % 107 249 148
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 298 30
95 % 121 298 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 121 298 44
70 % 121 298 55
50 % 144 464 28
40 % 144 467 41
30 % 144 467 59
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 255 50
95 % 120 294 50 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 120 294 54
70 % 120 294 65
50 % 120 294 94
40 % 120 294 116
30 % 120 294 130
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 285 44
95 % 120 285 54 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 120 285 59
70 % 120 285 71
50 % 120 285 100
40 % 120 285 123
30 % 120 285 134
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 295 33
95 % 120 296 41 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.6
PDBFlex
90 % 120 296 46
70 % 120 296 58
50 % 143 448 36
40 % 143 454 47
30 % 143 454 64
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 106 248 51
95 % 106 248 65 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 106 248 70
70 % 106 248 88
50 % 110 323 87
40 % 110 323 105
30 % 110 323 119
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 296 32
95 % 120 296 40 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 120 296 45
70 % 120 296 57
50 % 143 458 29
40 % 143 464 42
30 % 143 464 60
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 295 36
95 % 120 295 45 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 120 295 49
70 % 120 295 61
50 % 144 459 31
40 % 144 459 44
30 % 144 461 61
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 122 300 28
95 % 128 306 35 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 128 306 39
70 % 128 306 50
50 % 128 306 91
40 % 128 306 113
30 % 149 395 88
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 300 29
95 % 121 300 38 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 121 300 42
70 % 121 300 53
50 % 144 397 56
40 % 144 403 72
30 % 144 403 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures