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An Information Portal to 105906 Biological Macromolecular Structures

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMQ
Sequence Clusters for the Sequence Entities in PDB 1XMQ
Entity #1: Chains: A - 16s ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S Ribosomal Protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 191 22
95% 67 191 39
90% 67 195 39
70% 67 195 50
50% 83 271 35
40% 84 273 47
30% 98 323 44
Entity #11: Chains: I - 30S Ribosomal Protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 89 144
95% 66 191 44
90% 66 191 46
70% 66 191 57
50% 80 265 40
40% 80 265 55
30% 93 314 52
Entity #12: Chains: J - 30S Ribosomal Protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 189 28
95% 66 190 47
90% 66 190 50
70% 66 190 60
50% 86 271 34
40% 86 271 46
30% 86 276 66
Entity #13: Chains: K - 30S Ribosomal Protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 191 26
95% 66 191 43
90% 66 191 45
70% 66 191 56
50% 80 265 41
40% 95 318 35
30% 95 318 45
Entity #14: Chains: L - 30S Ribosomal Protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 160 35
95% 66 198 34
90% 66 198 36
70% 80 277 24
50% 80 277 33
40% 80 277 45
30% 80 277 69
Entity #15: Chains: M - 30S Ribosomal Protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 192 23
95% 66 192 40
90% 66 192 43
70% 66 192 54
50% 83 270 38
40% 83 270 51
30% 96 319 49
Entity #16: Chains: N - 30S Ribosomal Protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 190 27
95% 66 190 48
90% 66 190 51
70% 66 190 61
50% 66 190 94
40% 66 190 119
30% 66 190 142
Entity #17: Chains: O - 30S Ribosomal Protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 194 21
95% 70 199 33
90% 70 199 35
70% 70 199 47
50% 87 278 32
40% 87 278 43
30% 87 278 67
Entity #18: Chains: P - 30S Ribosomal Protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 186 29
95% 66 191 45
90% 66 191 48
70% 66 191 58
50% 66 191 92
40% 66 191 117
30% 83 268 78
Entity #19: Chains: Q - 30S Ribosomal Protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 79 223
95% 66 185 49
90% 66 189 52
70% 66 189 62
50% 66 189 95
40% 66 189 120
30% 66 189 143
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S Ribosomal Protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 494
95% 61 168 61
90% 61 168 64
70% 61 168 80
50% 61 168 117
40% 61 168 140
30% 61 168 163
Entity #21: Chains: S - 30S Ribosomal Protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 170 37
95% 61 170 59
90% 61 170 63
70% 61 170 78
50% 81 268 37
40% 81 268 50
30% 81 268 74
Entity #22: Chains: T - 30S Ribosomal Protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 142 42
95% 66 190 46
90% 66 190 49
70% 66 190 59
50% 66 190 93
40% 66 190 118
30% 66 190 141
Entity #23: Chains: V - 30S Ribosomal Protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 181 34
95% 66 181 53
90% 66 181 55
70% 66 181 69
50% 66 181 105
40% 66 181 132
30% 66 181 151
Entity #3: Chains: X - Anticodon RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S Ribosomal Protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 191 24
95% 66 192 37
90% 66 192 41
70% 66 192 52
50% 66 192 91
40% 80 265 54
30% 80 265 77
Entity #5: Chains: C - 30S Ribosomal Protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 167 38
95% 60 167 63
90% 60 167 66
70% 60 167 82
50% 63 206 77
40% 63 206 101
30% 63 206 122
Entity #6: Chains: D - 30S Ribosomal Protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 184 30
95% 66 192 38
90% 66 192 42
70% 66 192 53
50% 80 265 39
40% 80 266 52
30% 80 266 76
Entity #7: Chains: E - 30S Ribosomal Protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 191 25
95% 66 191 42
90% 66 191 44
70% 66 191 55
50% 81 269 36
40% 81 269 49
30% 81 271 73
Entity #8: Chains: F - 30S Ribosomal Protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 196 19
95% 74 202 30
90% 74 202 31
70% 74 202 45
50% 74 202 84
40% 74 202 108
30% 87 239 93
Entity #9: Chains: G - 30S Ribosomal Protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 195 20
95% 67 196 36
90% 67 196 38
70% 67 196 49
50% 82 237 56
40% 82 238 74
30% 82 238 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.