Sequence Similarity Clusters for the Entities in PDB 1XMQ

Entity #1 | Chains: A
16s ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 269 34
95 % 108 269 46
90 % 108 273 46
70 % 108 273 57
50 % 133 401 28
40 % 134 405 38
30 % 150 514 30
Entity #11 | Chains: I
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 91 212
95 % 107 269 51
90 % 107 269 55
70 % 107 269 65
50 % 130 395 35
40 % 130 395 47
30 % 144 501 35
Entity #12 | Chains: J
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 267 40
95 % 107 268 54
90 % 107 268 58
70 % 107 268 69
50 % 136 402 26
40 % 136 402 37
30 % 150 502 32
Entity #13 | Chains: K
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 269 37
95 % 107 269 50
90 % 107 269 54
70 % 107 269 64
50 % 130 395 34
40 % 146 501 19
30 % 146 501 33
Entity #14 | Chains: L
30S Ribosomal Protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 217 50
95 % 107 276 40
90 % 107 276 44
70 % 130 406 22
50 % 130 412 25
40 % 130 412 35
30 % 130 412 55
Entity #15 | Chains: M
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 270 35
95 % 107 270 47
90 % 107 270 52
70 % 107 270 62
50 % 133 400 33
40 % 133 400 45
30 % 147 502 36
Entity #16 | Chains: N
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 268 38
95 % 107 268 55
90 % 107 268 59
70 % 107 271 61
50 % 107 271 90
40 % 107 271 111
30 % 107 271 124
Entity #17 | Chains: O
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 272 30
95 % 111 277 39
90 % 111 277 43
70 % 111 277 55
50 % 137 408 27
40 % 137 411 36
30 % 137 411 56
Entity #18 | Chains: P
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 264 41
95 % 107 269 52
90 % 107 269 56
70 % 107 269 66
50 % 107 272 89
40 % 107 272 110
30 % 133 396 64
Entity #19 | Chains: Q
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 87 247
95 % 107 263 57
90 % 107 267 60
70 % 107 267 70
50 % 107 267 94
40 % 107 267 115
30 % 107 267 127
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 51 692
95 % 97 234 65
90 % 97 234 70
70 % 97 234 81
50 % 97 234 108
40 % 97 234 133
30 % 97 234 142
Entity #21 | Chains: S
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 272 29
95 % 108 272 43
90 % 108 272 48
70 % 108 272 58
50 % 131 400 30
40 % 131 403 41
30 % 131 403 58
Entity #22 | Chains: T
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 217 51
95 % 107 268 53
90 % 107 268 57
70 % 107 268 68
50 % 107 268 93
40 % 107 268 114
30 % 107 268 126
Entity #23 | Chains: V
30S Ribosomal Protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 259 43
95 % 107 259 59
90 % 107 259 63
70 % 107 259 75
50 % 107 259 98
40 % 107 259 120
30 % 107 259 131
Entity #3 | Chains: X
Anticodon RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 269 33
95 % 107 270 44
90 % 107 270 50
70 % 107 270 59
50 % 130 392 37
40 % 130 395 46
30 % 130 395 62
Entity #5 | Chains: C
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 233 48
95 % 96 233 66
90 % 96 233 71
70 % 96 233 82
50 % 100 306 83
40 % 100 306 102
30 % 100 306 114
Entity #6 | Chains: D
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 262 42
95 % 107 270 45
90 % 107 270 51
70 % 107 270 60
50 % 130 396 32
40 % 130 399 43
30 % 130 399 61
Entity #7 | Chains: E
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 269 36
95 % 107 269 49
90 % 107 269 53
70 % 107 269 63
50 % 131 400 31
40 % 131 400 44
30 % 131 402 59
Entity #8 | Chains: F
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 274 27
95 % 115 280 37
90 % 115 280 41
70 % 115 280 52
50 % 115 280 87
40 % 115 280 106
30 % 136 336 93
Entity #9 | Chains: G
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 273 28
95 % 108 274 41
90 % 108 274 45
70 % 108 274 56
50 % 131 339 71
40 % 131 342 84
30 % 131 342 97

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.