Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 256 31
95 % 171 256 42
90 % 172 260 43
70 % 172 260 52
50 % 202 366 29
40 % 203 368 39
30 % 226 447 31
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 91 198
95 % 171 256 46
90 % 171 256 51
70 % 171 256 60
50 % 199 360 36
40 % 199 360 46
30 % 220 437 40
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 254 36
95 % 171 255 49
90 % 171 255 54
70 % 171 255 64
50 % 205 366 28
40 % 205 366 38
30 % 226 440 36
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 256 34
95 % 171 256 45
90 % 171 256 50
70 % 171 256 59
50 % 199 360 35
40 % 222 442 20
30 % 222 443 33
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 208 46
95 % 171 263 36
90 % 171 263 41
70 % 199 371 21
50 % 199 372 27
40 % 199 372 37
30 % 199 372 57
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 257 32
95 % 171 257 43
90 % 171 257 48
70 % 171 257 57
50 % 202 365 32
40 % 202 365 44
30 % 223 441 39
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 255 35
95 % 171 255 50
90 % 171 255 55
70 % 171 256 62
50 % 171 256 88
40 % 171 256 108
30 % 171 256 120
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 259 29
95 % 175 264 35
90 % 175 264 40
70 % 175 264 50
50 % 206 373 26
40 % 206 374 36
30 % 206 374 56
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 251 37
95 % 171 256 47
90 % 171 256 52
70 % 171 256 61
50 % 171 256 87
40 % 171 257 107
30 % 202 363 63
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 87 225
95 % 170 250 51
90 % 171 254 56
70 % 171 254 66
50 % 171 254 90
40 % 171 254 112
30 % 171 254 124
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 51 616
95 % 154 221 64
90 % 154 221 69
70 % 154 221 79
50 % 154 221 111
40 % 154 221 132
30 % 154 221 143
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 259 27
95 % 172 259 38
90 % 172 259 44
70 % 172 259 53
50 % 200 363 31
40 % 200 363 42
30 % 200 363 59
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 204 48
95 % 171 255 48
90 % 171 255 53
70 % 171 255 63
50 % 171 255 89
40 % 171 255 111
30 % 171 255 123
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 246 39
95 % 171 246 54
90 % 171 246 59
70 % 171 246 69
50 % 171 246 96
40 % 171 246 119
30 % 171 246 133
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 256 30
95 % 171 257 39
90 % 171 257 45
70 % 171 257 54
50 % 199 359 34
40 % 199 360 45
30 % 199 360 61
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 220 45
95 % 154 220 65
90 % 154 220 70
70 % 154 220 80
50 % 160 280 77
40 % 160 280 99
30 % 160 280 112
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 249 38
95 % 171 257 40
90 % 171 257 46
70 % 171 257 55
50 % 199 360 33
40 % 199 361 43
30 % 199 361 60
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 256 33
95 % 171 256 44
90 % 171 256 49
70 % 171 256 58
50 % 200 364 30
40 % 200 364 41
30 % 200 366 58
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 261 25
95 % 179 267 34
90 % 179 267 37
70 % 179 267 46
50 % 179 267 84
40 % 179 267 103
30 % 203 313 82
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 260 26
95 % 172 261 37
90 % 172 261 42
70 % 172 261 51
50 % 199 313 56
40 % 199 314 74
30 % 199 314 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.