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Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMO
Sequence Clusters for the Sequence Entities in PDB 1XMO
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 255 23
95% 153 255 41
90% 154 259 40
70% 154 259 52
50% 195 369 36
40% 196 371 48
30% 199 408 50
Entity #11: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 113 133
95% 153 255 45
90% 153 255 48
70% 153 255 60
50% 192 363 41
40% 192 363 56
30% 194 399 58
Entity #12: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 252 29
95% 153 254 48
90% 153 254 51
70% 153 254 63
50% 198 369 34
40% 198 369 47
30% 198 374 66
Entity #13: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 255 27
95% 153 255 44
90% 153 255 47
70% 153 255 59
50% 192 363 42
40% 196 403 39
30% 196 403 53
Entity #14: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 224 37
95% 153 262 36
90% 153 262 38
70% 192 375 24
50% 192 375 33
40% 192 375 46
30% 192 375 71
Entity #15: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 256 24
95% 153 256 42
90% 153 256 45
70% 153 256 57
50% 192 365 39
40% 192 365 53
30% 194 401 55
Entity #16: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 254 28
95% 153 254 49
90% 153 254 52
70% 153 254 64
50% 153 254 97
40% 153 254 122
30% 153 254 144
Entity #17: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 258 21
95% 157 263 35
90% 157 263 37
70% 157 263 48
50% 199 376 32
40% 199 376 44
30% 199 376 69
Entity #18: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 250 30
95% 153 255 46
90% 153 255 49
70% 153 255 61
50% 153 255 95
40% 153 255 120
30% 192 363 78
Entity #19: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 92 218
95% 152 249 51
90% 153 253 53
70% 153 253 65
50% 153 253 98
40% 153 253 124
30% 153 253 146
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 460
95% 145 221 64
90% 145 221 68
70% 145 221 81
50% 145 221 116
40% 145 221 144
30% 145 221 166
Entity #21: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 223 38
95% 145 223 63
90% 145 223 67
70% 145 223 80
50% 193 366 38
40% 193 366 52
30% 193 366 74
Entity #22: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 193 43
95% 153 254 47
90% 153 254 50
70% 153 254 62
50% 153 254 96
40% 153 254 121
30% 153 254 143
Entity #23: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 238 34
95% 153 238 55
90% 153 238 59
70% 153 238 71
50% 153 238 110
40% 153 238 133
30% 153 238 153
Entity #3: Chains: X - Anticodon Transfer RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 255 25
95% 153 256 39
90% 153 256 43
70% 153 256 55
50% 153 256 94
40% 192 363 55
30% 192 363 77
Entity #5: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 219 39
95% 144 219 66
90% 144 219 70
70% 144 219 83
50% 159 282 81
40% 159 282 101
30% 159 282 123
Entity #6: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 248 32
95% 153 256 40
90% 153 256 44
70% 153 256 56
50% 192 363 40
40% 192 364 54
30% 192 364 75
Entity #7: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 255 26
95% 153 255 43
90% 153 255 46
70% 153 255 58
50% 193 367 37
40% 193 367 51
30% 193 369 72
Entity #8: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 260 18
95% 161 266 34
90% 161 266 36
70% 161 266 47
50% 161 266 88
40% 161 266 110
30% 187 313 94
Entity #9: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 259 20
95% 154 260 37
90% 154 260 39
70% 154 260 50
50% 180 308 57
40% 180 309 73
30% 180 309 97
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.