Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 272 32
95 % 177 272 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 178 276 46
70 % 178 276 57
50 % 208 432 28
40 % 209 438 39
30 % 241 562 32
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 91 229
95 % 177 272 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 177 272 54
70 % 177 272 66
50 % 205 421 34
40 % 205 421 47
30 % 235 546 35
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 176 270 38
95 % 177 271 53 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 177 271 57
70 % 177 271 69
50 % 211 432 26
40 % 211 432 40
30 % 241 545 34
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 272 35
95 % 177 272 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 177 272 53
70 % 177 272 65
50 % 205 426 33
40 % 237 557 19
30 % 237 557 33
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 218 54
95 % 177 279 39
90 % 177 279 44
70 % 205 430 18
50 % 205 443 24
40 % 205 443 38
30 % 205 443 57
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 273 33
95 % 177 273 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 177 273 51
70 % 177 273 62
50 % 208 430 32
40 % 208 430 45
30 % 238 546 37
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 271 36
95 % 177 271 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 177 271 59
70 % 177 284 54
50 % 177 284 92
40 % 177 284 115
30 % 177 284 124
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 275 30
95 % 181 280 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 181 280 43
70 % 181 280 55
50 % 212 439 25
40 % 212 444 37
30 % 212 444 56
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 267 41
95 % 177 272 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 177 272 55
70 % 177 272 67
50 % 177 282 93
40 % 177 282 116
30 % 208 423 65
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 87 267
95 % 176 266 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 177 270 60
70 % 177 270 70
50 % 177 270 97
40 % 177 270 120
30 % 177 270 128
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 51 737
95 % 160 237 66 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 160 237 70
70 % 160 237 84
50 % 160 237 117
40 % 160 237 140
30 % 160 237 145
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 178 275 29
95 % 178 275 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 178 275 48
70 % 178 275 59
50 % 206 432 29
40 % 206 435 41
30 % 206 435 59
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 220 53
95 % 177 271 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 177 271 56
70 % 177 271 68
50 % 177 271 96
40 % 177 271 119
30 % 177 271 127
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 262 43
95 % 177 262 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 177 262 63
70 % 177 262 75
50 % 177 262 102
40 % 177 262 125
30 % 177 262 133
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 272 31
95 % 177 273 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 177 273 49
70 % 177 273 60
50 % 205 419 35
40 % 205 424 46
30 % 205 424 63
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 236 49
95 % 160 236 67 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 160 236 71
70 % 160 236 85
50 % 166 310 86
40 % 166 310 106
30 % 166 310 118
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 175 265 42
95 % 177 273 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 177 273 50
70 % 177 273 61
50 % 205 427 30
40 % 205 432 43
30 % 205 432 60
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 272 34
95 % 177 272 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 177 272 52
70 % 177 272 63
50 % 206 427 31
40 % 206 427 44
30 % 206 429 62
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 179 277 27
95 % 185 283 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 185 283 42
70 % 185 283 52
50 % 185 283 91
40 % 185 283 114
30 % 209 366 94
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 178 276 28
95 % 178 277 40 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 178 277 45
70 % 178 277 56
50 % 205 367 66
40 % 205 372 84
30 % 205 372 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures