Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 284 31
95 % 185 284 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 186 288 45
70 % 186 288 54
50 % 216 446 28
40 % 217 452 39
30 % 249 577 32
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 93 224
95 % 185 284 48 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 185 284 53
70 % 185 284 63
50 % 213 435 35
40 % 213 435 47
30 % 243 561 35
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 282 38
95 % 185 283 51 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 185 283 56
70 % 185 283 67
50 % 219 446 27
40 % 219 446 40
30 % 249 560 34
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 284 35
95 % 185 284 47 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 185 284 52
70 % 185 284 62
50 % 213 440 34
40 % 245 572 19
30 % 245 572 33
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 220 54
95 % 185 291 37
90 % 185 291 43
70 % 213 444 18
50 % 213 457 24
40 % 213 457 37
30 % 213 457 57
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 285 32
95 % 185 285 44 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 185 285 49
70 % 185 285 59
50 % 216 444 33
40 % 216 444 45
30 % 246 561 36
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 283 36
95 % 185 283 52 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 185 283 57
70 % 185 296 50
50 % 185 296 90
40 % 185 296 112
30 % 185 296 124
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 287 29
95 % 189 292 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 189 292 41
70 % 189 292 51
50 % 220 453 26
40 % 220 458 36
30 % 220 458 55
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 279 39
95 % 185 284 49 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 185 284 54
70 % 185 284 64
50 % 185 294 91
40 % 185 294 114
30 % 216 437 64
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 91 263
95 % 184 278 53 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 185 282 58
70 % 185 282 68
50 % 185 282 96
40 % 185 282 119
30 % 185 282 128
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 51 749
95 % 163 241 66 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 163 241 69
70 % 163 241 84
50 % 163 241 114
40 % 163 241 139
30 % 163 241 146
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 287 28
95 % 186 287 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 186 287 46
70 % 186 287 55
50 % 214 446 29
40 % 214 449 41
30 % 214 449 59
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 231 50
95 % 185 283 50 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 185 283 55
70 % 185 283 66
50 % 185 283 95
40 % 185 283 118
30 % 185 283 127
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 183 272 43
95 % 183 272 58 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 183 272 63
70 % 183 272 73
50 % 183 272 99
40 % 183 272 124
30 % 183 272 131
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 284 30
95 % 185 285 41 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 185 285 47
70 % 185 285 56
50 % 213 433 36
40 % 213 438 46
30 % 213 438 62
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 163 240 46
95 % 163 240 67 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 163 240 70
70 % 163 240 85
50 % 169 315 86
40 % 169 315 104
30 % 169 315 118
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 183 277 40
95 % 185 285 42 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 185 285 48
70 % 185 285 57
50 % 213 441 30
40 % 213 446 42
30 % 213 446 60
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 284 34
95 % 185 284 46 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 185 284 51
70 % 185 284 61
50 % 214 441 32
40 % 214 441 44
30 % 214 443 61
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 187 289 26
95 % 193 295 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 193 295 39
70 % 193 295 48
50 % 193 295 88
40 % 193 295 110
30 % 217 378 86
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 288 27
95 % 186 289 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 186 289 44
70 % 186 289 53
50 % 213 380 64
40 % 213 385 75
30 % 213 385 90

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures