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An Information Portal to 110790 Biological Macromolecular Structures

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMO
Sequence Clusters for the Sequence Entities in PDB 1XMO
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 220 31
95% 141 220 44
90% 142 224 45
70% 142 224 56
50% 164 306 34
40% 165 308 44
30% 184 365 40
Entity #11: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 90 167
95% 141 220 48
90% 141 220 52
70% 141 220 63
50% 161 300 43
40% 161 300 52
30% 179 356 48
Entity #12: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 218 36
95% 141 219 51
90% 141 219 55
70% 141 219 67
50% 167 306 33
40% 167 306 43
30% 185 360 42
Entity #13: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 220 34
95% 141 220 47
90% 141 220 51
70% 141 220 62
50% 161 300 42
40% 181 361 30
30% 181 362 41
Entity #14: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 183 46
95% 141 227 38
90% 141 227 42
70% 161 311 23
50% 161 312 32
40% 161 312 42
30% 161 312 57
Entity #15: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 221 32
95% 141 221 45
90% 141 221 49
70% 141 221 60
50% 164 305 38
40% 164 305 50
30% 182 361 47
Entity #16: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 219 35
95% 141 219 52
90% 141 219 56
70% 141 220 65
50% 141 220 92
40% 141 220 113
30% 141 220 126
Entity #17: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 223 29
95% 145 228 26
90% 145 228 31
70% 145 228 43
50% 168 313 29
40% 168 314 40
30% 168 314 55
Entity #18: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 215 37
95% 141 220 49
90% 141 220 53
70% 141 220 64
50% 141 220 91
40% 141 221 112
30% 164 303 70
Entity #19: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 80 224
95% 140 214 56
90% 141 218 58
70% 141 218 69
50% 141 218 94
40% 141 218 116
30% 141 218 128
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 525
95% 131 194 64
90% 131 194 66
70% 131 194 79
50% 131 194 111
40% 131 194 130
30% 131 194 150
Entity #21: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 223 27
95% 142 223 41
90% 142 223 46
70% 142 223 57
50% 162 303 37
40% 162 303 48
30% 162 303 67
Entity #22: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 170 49
95% 141 219 50
90% 141 219 54
70% 141 219 66
50% 141 219 93
40% 141 219 114
30% 141 219 127
Entity #23: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 210 40
95% 141 210 59
90% 141 210 62
70% 141 210 73
50% 141 210 98
40% 141 210 120
30% 141 210 133
Entity #3: Chains: X - Anticodon Transfer RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 220 30
95% 141 221 42
90% 141 221 47
70% 141 221 58
50% 161 299 41
40% 161 300 51
30% 161 300 69
Entity #5: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 193 45
95% 131 193 65
90% 131 193 67
70% 131 193 80
50% 136 236 78
40% 136 236 99
30% 136 236 119
Entity #6: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 213 38
95% 141 221 43
90% 141 221 48
70% 141 221 59
50% 161 300 39
40% 161 301 49
30% 161 301 68
Entity #7: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 220 33
95% 141 220 46
90% 141 220 50
70% 141 220 61
50% 162 304 36
40% 162 304 47
30% 162 306 65
Entity #8: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 225 24
95% 149 231 24
90% 149 231 29
70% 149 231 41
50% 149 231 83
40% 149 231 105
30% 166 270 79
Entity #9: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 224 26
95% 142 225 40
90% 142 225 44
70% 142 225 55
50% 162 268 51
40% 162 269 62
30% 162 269 81
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.