Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 254 29
95 % 170 254 40
90 % 171 258 42
70 % 171 258 51
50 % 194 348 29
40 % 195 350 39
30 % 215 423 33
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 91 192
95 % 170 254 44
90 % 170 254 49
70 % 170 254 58
50 % 191 342 37
40 % 191 342 47
30 % 210 414 44
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 252 35
95 % 170 253 47
90 % 170 253 52
70 % 170 253 62
50 % 197 348 28
40 % 197 348 38
30 % 216 418 37
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 254 33
95 % 170 254 43
90 % 170 254 48
70 % 170 254 57
50 % 191 342 36
40 % 212 419 22
30 % 212 420 35
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 206 44
95 % 170 261 35
90 % 170 261 39
70 % 191 353 23
50 % 191 354 27
40 % 191 354 37
30 % 191 354 56
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 30
95 % 170 255 41
90 % 170 255 46
70 % 170 255 55
50 % 194 347 33
40 % 194 347 45
30 % 213 419 42
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 253 34
95 % 170 253 48
90 % 170 253 53
70 % 170 254 60
50 % 170 254 86
40 % 170 254 106
30 % 170 254 118
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 257 27
95 % 174 262 33
90 % 174 262 37
70 % 174 262 48
50 % 198 355 26
40 % 198 356 36
30 % 198 356 55
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 249 36
95 % 170 254 45
90 % 170 254 50
70 % 170 254 59
50 % 170 254 85
40 % 170 255 105
30 % 194 345 62
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 87 221
95 % 169 248 50
90 % 170 252 54
70 % 170 252 63
50 % 170 252 88
40 % 170 252 108
30 % 170 252 120
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 51 579
95 % 153 219 62
90 % 153 219 66
70 % 153 219 77
50 % 153 219 107
40 % 153 219 128
30 % 153 219 142
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 257 26
95 % 171 257 37
90 % 171 257 43
70 % 171 257 52
50 % 192 345 31
40 % 192 345 42
30 % 192 345 59
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 202 47
95 % 170 253 46
90 % 170 253 51
70 % 170 253 61
50 % 170 253 87
40 % 170 253 107
30 % 170 253 119
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 244 38
95 % 170 244 54
90 % 170 244 57
70 % 170 244 67
50 % 170 244 91
40 % 170 244 113
30 % 170 244 126
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 254 28
95 % 170 255 38
90 % 170 255 44
70 % 170 255 53
50 % 191 341 35
40 % 191 342 46
30 % 191 342 61
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 218 43
95 % 153 218 63
90 % 153 218 67
70 % 153 218 78
50 % 159 269 77
40 % 159 269 97
30 % 159 269 112
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 247 37
95 % 170 255 39
90 % 170 255 45
70 % 170 255 54
50 % 191 342 34
40 % 191 343 44
30 % 191 343 60
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 254 32
95 % 170 254 42
90 % 170 254 47
70 % 170 254 56
50 % 192 346 30
40 % 192 346 41
30 % 192 348 57
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 259 24
95 % 178 265 21
90 % 178 265 24
70 % 178 265 32
50 % 178 265 79
40 % 178 265 100
30 % 195 304 78
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 258 25
95 % 171 259 36
90 % 171 259 41
70 % 171 259 50
50 % 191 304 51
40 % 191 305 63
30 % 191 305 86

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.