Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 33
95 % 174 269 46
90 % 175 273 46
70 % 175 273 57
50 % 205 399 29
40 % 206 403 38
30 % 233 512 30
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 91 211
95 % 174 269 51
90 % 174 269 54
70 % 174 269 65
50 % 202 393 36
40 % 202 393 47
30 % 227 499 35
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 267 39
95 % 174 268 54
90 % 174 268 57
70 % 174 268 69
50 % 208 400 26
40 % 208 400 37
30 % 233 500 32
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 36
95 % 174 269 50
90 % 174 269 53
70 % 174 269 64
50 % 202 393 35
40 % 229 499 19
30 % 229 499 33
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 217 50
95 % 174 276 40
90 % 174 276 44
70 % 202 406 22
50 % 202 411 25
40 % 202 411 35
30 % 202 411 55
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 270 34
95 % 174 270 47
90 % 174 270 51
70 % 174 270 61
50 % 205 398 33
40 % 205 398 46
30 % 230 500 36
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 268 38
95 % 174 268 55
90 % 174 268 58
70 % 174 270 62
50 % 174 270 90
40 % 174 270 112
30 % 174 270 124
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 272 30
95 % 178 277 39
90 % 178 277 43
70 % 178 277 55
50 % 209 406 27
40 % 209 409 36
30 % 209 409 56
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 264 40
95 % 174 269 52
90 % 174 269 55
70 % 174 269 66
50 % 174 271 89
40 % 174 271 110
30 % 205 394 63
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 87 246
95 % 173 263 57
90 % 174 267 59
70 % 174 267 70
50 % 174 267 94
40 % 174 267 115
30 % 174 267 127
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 51 692
95 % 157 234 64
90 % 157 234 68
70 % 157 234 80
50 % 157 234 108
40 % 157 234 133
30 % 157 234 142
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 272 29
95 % 175 272 43
90 % 175 272 48
70 % 175 272 58
50 % 203 398 30
40 % 203 401 40
30 % 203 401 58
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 217 51
95 % 174 268 53
90 % 174 268 56
70 % 174 268 68
50 % 174 268 92
40 % 174 268 113
30 % 174 268 125
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 259 43
95 % 174 259 59
90 % 174 259 63
70 % 174 259 75
50 % 174 259 97
40 % 174 259 120
30 % 174 259 130
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 32
95 % 174 270 44
90 % 174 270 49
70 % 174 270 59
50 % 202 392 34
40 % 202 395 45
30 % 202 395 62
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 233 47
95 % 157 233 65
90 % 157 233 69
70 % 157 233 81
50 % 163 306 83
40 % 163 306 102
30 % 163 306 113
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 262 41
95 % 174 270 45
90 % 174 270 50
70 % 174 270 60
50 % 202 394 32
40 % 202 397 42
30 % 202 397 61
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 35
95 % 174 269 49
90 % 174 269 52
70 % 174 269 63
50 % 203 398 31
40 % 203 398 43
30 % 203 400 59
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 274 27
95 % 182 280 36
90 % 182 280 41
70 % 182 280 52
50 % 182 280 87
40 % 182 280 106
30 % 206 334 90
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 273 28
95 % 175 274 41
90 % 175 274 45
70 % 175 274 56
50 % 202 338 71
40 % 202 341 79
30 % 202 341 93

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.