Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 32
95 % 174 269 42
90 % 175 273 41
70 % 175 273 51
50 % 205 385 28
40 % 206 387 38
30 % 231 482 28
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 91 200
95 % 174 269 47
90 % 174 269 50
70 % 174 269 59
50 % 202 379 36
40 % 202 379 45
30 % 225 472 37
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 267 37
95 % 174 268 50
90 % 174 268 53
70 % 174 268 64
50 % 208 385 26
40 % 208 385 37
30 % 231 475 29
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 35
95 % 174 269 46
90 % 174 269 49
70 % 174 269 58
50 % 202 379 35
40 % 227 469 19
30 % 227 470 33
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 217 47
95 % 174 276 35
90 % 174 276 39
70 % 202 390 21
50 % 202 391 25
40 % 202 391 36
30 % 202 391 55
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 270 33
95 % 174 270 43
90 % 174 270 47
70 % 174 270 56
50 % 205 384 31
40 % 205 384 43
30 % 228 476 35
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 268 36
95 % 174 268 51
90 % 174 268 54
70 % 174 269 61
50 % 174 269 87
40 % 174 269 107
30 % 174 269 117
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 272 28
95 % 178 277 34
90 % 178 277 38
70 % 178 277 49
50 % 209 392 23
40 % 209 393 35
30 % 209 393 53
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 264 38
95 % 174 269 48
90 % 174 269 51
70 % 174 269 60
50 % 174 269 86
40 % 174 270 106
30 % 205 382 62
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 87 231
95 % 173 263 52
90 % 174 267 55
70 % 174 267 65
50 % 174 267 90
40 % 174 267 109
30 % 174 267 119
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 51 635
95 % 157 234 62
90 % 157 234 66
70 % 157 234 77
50 % 157 234 103
40 % 157 234 129
30 % 157 234 139
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 272 27
95 % 175 272 39
90 % 175 272 44
70 % 175 272 53
50 % 203 382 30
40 % 203 382 41
30 % 203 382 59
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 217 48
95 % 174 268 49
90 % 174 268 52
70 % 174 268 63
50 % 174 268 89
40 % 174 268 108
30 % 174 268 118
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 259 41
95 % 174 259 54
90 % 174 259 58
70 % 174 259 68
50 % 174 259 93
40 % 174 259 115
30 % 174 259 128
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 31
95 % 174 270 40
90 % 174 270 45
70 % 174 270 54
50 % 202 378 34
40 % 202 379 44
30 % 202 379 61
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 233 44
95 % 157 233 63
90 % 157 233 67
70 % 157 233 78
50 % 163 293 78
40 % 163 293 96
30 % 163 293 113
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 262 39
95 % 174 270 41
90 % 174 270 46
70 % 174 270 55
50 % 202 379 32
40 % 202 380 42
30 % 202 380 60
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 269 34
95 % 174 269 45
90 % 174 269 48
70 % 174 269 57
50 % 203 383 29
40 % 203 383 40
30 % 203 385 58
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 274 24
95 % 182 280 32
90 % 182 280 37
70 % 182 280 48
50 % 182 280 83
40 % 182 280 102
30 % 206 332 78
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 273 26
95 % 175 274 36
90 % 175 274 40
70 % 175 274 50
50 % 202 332 59
40 % 202 333 72
30 % 202 333 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.