Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 30
95 % 170 255 40
90 % 171 259 42
70 % 171 259 51
50 % 201 359 29
40 % 202 361 39
30 % 223 438 32
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 91 197
95 % 170 255 44
90 % 170 255 49
70 % 170 255 58
50 % 198 353 36
40 % 198 353 45
30 % 218 429 39
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 253 35
95 % 170 254 48
90 % 170 254 53
70 % 170 254 63
50 % 204 359 28
40 % 204 359 38
30 % 224 432 35
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 33
95 % 170 255 43
90 % 170 255 48
70 % 170 255 57
50 % 198 353 35
40 % 220 434 20
30 % 220 435 33
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 207 46
95 % 170 262 35
90 % 170 262 40
70 % 198 364 22
50 % 198 365 27
40 % 198 365 37
30 % 198 365 56
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 256 31
95 % 170 256 41
90 % 170 256 46
70 % 170 256 55
50 % 201 358 32
40 % 201 358 43
30 % 221 433 38
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 254 34
95 % 170 254 49
90 % 170 254 54
70 % 170 255 60
50 % 170 255 86
40 % 170 255 107
30 % 170 255 120
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 258 27
95 % 174 263 34
90 % 174 263 39
70 % 174 263 49
50 % 205 366 26
40 % 205 367 36
30 % 205 367 55
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 250 36
95 % 170 255 45
90 % 170 255 50
70 % 170 255 59
50 % 170 255 85
40 % 170 256 106
30 % 201 356 61
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 87 224
95 % 169 249 51
90 % 170 253 55
70 % 170 253 64
50 % 170 253 88
40 % 170 253 109
30 % 170 253 123
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 51 608
95 % 153 220 63
90 % 153 220 68
70 % 153 220 78
50 % 153 220 108
40 % 153 220 131
30 % 153 220 142
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 258 26
95 % 171 258 37
90 % 171 258 43
70 % 171 258 52
50 % 199 356 31
40 % 199 356 41
30 % 199 356 58
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 203 47
95 % 170 254 47
90 % 170 254 52
70 % 170 254 62
50 % 170 254 87
40 % 170 254 108
30 % 170 254 121
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 245 38
95 % 170 245 53
90 % 170 245 58
70 % 170 245 68
50 % 170 245 93
40 % 170 245 117
30 % 170 245 131
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 28
95 % 170 256 38
90 % 170 256 44
70 % 170 256 53
50 % 198 352 34
40 % 198 353 44
30 % 198 353 60
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 219 44
95 % 153 219 64
90 % 153 219 69
70 % 153 219 79
50 % 159 273 78
40 % 159 273 100
30 % 159 273 112
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 248 37
95 % 170 256 39
90 % 170 256 45
70 % 170 256 54
50 % 198 353 33
40 % 198 354 42
30 % 198 354 59
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 32
95 % 170 255 42
90 % 170 255 47
70 % 170 255 56
50 % 199 357 30
40 % 199 357 40
30 % 199 359 57
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 260 24
95 % 178 266 33
90 % 178 266 36
70 % 178 266 45
50 % 178 266 83
40 % 178 266 102
30 % 202 312 77
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 259 25
95 % 171 260 36
90 % 171 260 41
70 % 171 260 50
50 % 198 312 52
40 % 198 313 64
30 % 198 313 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.