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An Information Portal to 109093 Biological Macromolecular Structures

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMO
Sequence Clusters for the Sequence Entities in PDB 1XMO
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 206 19
95% 128 206 38
90% 129 210 37
70% 129 210 46
50% 151 290 36
40% 152 292 46
30% 171 347 44
Entity #11: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 90 160
95% 128 206 42
90% 128 206 44
70% 128 206 53
50% 148 284 42
40% 148 284 52
30% 166 338 49
Entity #12: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 204 25
95% 128 205 45
90% 128 205 47
70% 128 205 57
50% 154 290 35
40% 154 290 45
30% 172 342 46
Entity #13: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 206 23
95% 128 206 41
90% 128 206 43
70% 128 206 52
50% 148 284 41
40% 168 343 34
30% 168 344 45
Entity #14: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 172 33
95% 128 213 32
90% 128 213 35
70% 148 295 24
50% 148 296 34
40% 148 296 44
30% 148 296 67
Entity #15: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 207 20
95% 128 207 39
90% 128 207 41
70% 128 207 50
50% 151 289 39
40% 151 289 49
30% 169 343 48
Entity #16: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 205 24
95% 128 205 46
90% 128 205 48
70% 128 206 55
50% 128 206 85
40% 128 206 110
30% 128 206 129
Entity #17: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 209 18
95% 132 214 30
90% 132 214 33
70% 132 214 43
50% 155 297 33
40% 155 298 43
30% 155 298 65
Entity #18: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 201 29
95% 128 206 43
90% 128 206 45
70% 128 206 54
50% 128 206 84
40% 128 207 109
30% 151 287 74
Entity #19: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 80 223
95% 127 200 47
90% 128 204 49
70% 128 204 58
50% 128 204 87
40% 128 204 112
30% 128 204 131
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 515
95% 118 180 55
90% 118 180 57
70% 118 180 72
50% 118 180 119
40% 118 180 143
30% 118 180 159
Entity #21: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 209 17
95% 129 209 34
90% 129 209 38
70% 129 209 47
50% 149 287 38
40% 149 287 48
30% 149 287 71
Entity #22: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 156 52
95% 128 205 44
90% 128 205 46
70% 128 205 56
50% 128 205 86
40% 128 205 111
30% 128 205 130
Entity #23: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 196 32
95% 128 196 51
90% 128 196 53
70% 128 196 64
50% 128 196 97
40% 128 196 120
30% 128 196 143
Entity #3: Chains: X - Anticodon Transfer RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 206 21
95% 128 207 36
90% 128 207 39
70% 128 207 48
50% 148 283 43
40% 148 284 51
30% 148 284 73
Entity #5: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 179 36
95% 118 179 56
90% 118 179 59
70% 118 179 73
50% 123 220 77
40% 123 220 101
30% 123 220 120
Entity #6: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 199 30
95% 128 207 37
90% 128 207 40
70% 128 207 49
50% 148 284 40
40% 148 285 50
30% 148 285 72
Entity #7: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 206 22
95% 128 206 40
90% 128 206 42
70% 128 206 51
50% 149 288 37
40% 149 288 47
30% 149 290 69
Entity #8: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 211 15
95% 136 217 28
90% 136 217 31
70% 136 217 41
50% 136 217 78
40% 136 217 102
30% 153 256 85
Entity #9: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 210 16
95% 129 211 33
90% 129 211 36
70% 129 211 45
50% 149 254 52
40% 149 255 67
30% 149 255 88
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.