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An Information Portal to 108263 Biological Macromolecular Structures

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center
Sequence Clustering and Redundancy Reduction Results
1XMO
Sequence Clusters for the Sequence Entities in PDB 1XMO
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 199 21
95% 126 199 37
90% 127 203 35
70% 127 203 45
50% 149 282 36
40% 150 284 46
30% 169 338 44
Entity #11: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 90 158
95% 126 199 41
90% 126 199 43
70% 126 199 55
50% 146 276 41
40% 146 276 54
30% 164 329 50
Entity #12: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 197 29
95% 126 198 45
90% 126 198 47
70% 126 198 59
50% 152 282 35
40% 152 282 45
30% 170 333 46
Entity #13: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 199 25
95% 126 199 40
90% 126 199 42
70% 126 199 54
50% 146 276 42
40% 166 333 35
30% 166 333 45
Entity #14: Chains: L - 30S ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 166 36
95% 126 206 31
90% 126 206 33
70% 146 288 24
50% 146 288 34
40% 146 288 44
30% 146 288 69
Entity #15: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 200 22
95% 126 200 38
90% 126 200 40
70% 126 200 51
50% 149 281 39
40% 149 281 50
30% 167 334 49
Entity #16: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 198 26
95% 126 198 46
90% 126 198 48
70% 126 198 60
50% 126 198 92
40% 126 198 114
30% 126 198 138
Entity #17: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 202 20
95% 130 207 30
90% 130 207 32
70% 130 207 43
50% 153 289 33
40% 153 289 43
30% 153 289 67
Entity #18: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 194 30
95% 126 199 42
90% 126 199 44
70% 126 199 56
50% 126 199 89
40% 126 199 112
30% 149 279 76
Entity #19: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 80 222
95% 125 193 50
90% 126 197 49
70% 126 197 61
50% 126 197 93
40% 126 197 116
30% 126 197 139
Entity #2: Chains: W - A-Site Messenger RNA rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 508
95% 117 174 71
90% 117 174 75
70% 117 174 89
50% 117 174 130
40% 117 174 148
30% 117 174 164
Entity #21: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 202 19
95% 127 202 33
90% 127 202 36
70% 127 202 47
50% 147 279 38
40% 147 279 49
30% 147 279 73
Entity #22: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 149 54
95% 126 198 44
90% 126 198 46
70% 126 198 58
50% 126 198 91
40% 126 198 113
30% 126 198 137
Entity #23: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 189 32
95% 126 189 52
90% 126 189 55
70% 126 189 67
50% 126 189 112
40% 126 189 135
30% 126 189 153
Entity #3: Chains: X - Anticodon Transfer RNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 199 23
95% 126 200 35
90% 126 200 38
70% 126 200 48
50% 126 200 88
40% 146 276 53
30% 146 276 75
Entity #5: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 173 48
95% 117 173 72
90% 117 173 76
70% 117 173 91
50% 122 214 76
40% 122 214 102
30% 122 214 122
Entity #6: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 192 31
95% 126 200 36
90% 126 200 39
70% 126 200 49
50% 146 276 40
40% 146 277 51
30% 146 277 74
Entity #7: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 199 24
95% 126 199 39
90% 126 199 41
70% 126 199 52
50% 147 280 37
40% 147 280 48
30% 147 282 72
Entity #8: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 204 17
95% 134 210 29
90% 134 210 31
70% 134 210 42
50% 134 210 82
40% 134 210 107
30% 151 248 87
Entity #9: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 203 18
95% 127 204 32
90% 127 204 34
70% 127 204 44
50% 147 246 54
40% 147 247 71
30% 147 247 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.