Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 292 29
95 % 191 292 42 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 192 296 43
70 % 192 296 52
50 % 222 454 27
40 % 223 461 39
30 % 256 589 32
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 94 223
95 % 191 292 46 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 191 292 51
70 % 191 292 61
50 % 219 443 34
40 % 219 444 48
30 % 250 573 36
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 190 290 34
95 % 191 291 49 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 191 291 54
70 % 191 291 65
50 % 225 455 25
40 % 225 455 40
30 % 256 572 34
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 292 32
95 % 191 292 45 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 191 292 50
70 % 191 292 60
50 % 219 449 33
40 % 252 584 19
30 % 252 584 33
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 220 54
95 % 191 299 37
90 % 191 299 41
70 % 219 453 17
50 % 219 466 24
40 % 219 466 38
30 % 219 466 57
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 293 30
95 % 191 293 43 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 191 293 47
70 % 191 293 58
50 % 222 453 32
40 % 222 453 46
30 % 253 573 37
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 291 33
95 % 191 291 50 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 191 291 55
70 % 191 304 49
50 % 191 304 89
40 % 191 304 110
30 % 191 304 122
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 295 27
95 % 195 300 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 195 300 40
70 % 195 300 50
50 % 226 461 26
40 % 226 466 37
30 % 226 466 56
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 287 35
95 % 191 292 47 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 191 292 52
70 % 191 292 62
50 % 191 302 90
40 % 191 308 107
30 % 222 451 64
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 91 276
95 % 189 285 51 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 190 289 56
70 % 190 289 66
50 % 190 289 94
40 % 190 289 117
30 % 190 289 127
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 51 753
95 % 168 246 65 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 168 246 68
70 % 168 246 84
50 % 168 246 113
40 % 168 246 138
30 % 168 246 143
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 192 295 26
95 % 192 295 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 192 295 44
70 % 192 295 54
50 % 220 455 28
40 % 220 458 42
30 % 220 458 58
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 238 47
95 % 191 291 48 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 191 291 53
70 % 191 291 64
50 % 191 291 93
40 % 191 291 116
30 % 191 291 126
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 282 41
95 % 191 282 55 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 191 282 61
70 % 191 282 71
50 % 191 282 98
40 % 191 282 121
30 % 191 282 129
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 292 28
95 % 191 293 40 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 191 293 45
70 % 191 293 55
50 % 219 441 35
40 % 219 447 47
30 % 219 447 63
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 245 46
95 % 168 245 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 168 245 69
70 % 168 245 85
50 % 174 320 86
40 % 174 320 104
30 % 174 320 116
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 189 285 38
95 % 191 293 41 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 191 293 46
70 % 191 293 57
50 % 219 449 29
40 % 219 455 43
30 % 219 455 59
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 191 292 31
95 % 191 292 44 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 191 292 49
70 % 191 292 59
50 % 220 450 31
40 % 220 450 45
30 % 220 452 61
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 297 24
95 % 199 303 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 199 303 39
70 % 199 303 48
50 % 199 303 88
40 % 199 303 109
30 % 223 386 88
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 192 296 25
95 % 192 297 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 192 297 42
70 % 192 297 51
50 % 219 388 60
40 % 219 394 71
30 % 219 394 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures