Sequence Similarity Clusters for the Entities in PDB 1XMO

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 31
95 % 170 255 42
90 % 171 259 43
70 % 171 259 52
50 % 201 361 29
40 % 202 363 39
30 % 223 440 33
Entity #11 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 91 198
95 % 170 255 46
90 % 170 255 51
70 % 170 255 60
50 % 198 355 36
40 % 198 355 46
30 % 218 431 40
Entity #12 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 253 36
95 % 170 254 49
90 % 170 254 54
70 % 170 254 64
50 % 204 361 28
40 % 204 361 38
30 % 224 434 36
Entity #13 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 34
95 % 170 255 45
90 % 170 255 50
70 % 170 255 59
50 % 198 355 35
40 % 220 436 20
30 % 220 437 34
Entity #14 | Chains: L
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 207 47
95 % 170 262 36
90 % 170 262 41
70 % 198 366 21
50 % 198 367 27
40 % 198 367 37
30 % 198 367 57
Entity #15 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 256 32
95 % 170 256 43
90 % 170 256 48
70 % 170 256 57
50 % 201 360 32
40 % 201 360 44
30 % 221 435 39
Entity #16 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 254 35
95 % 170 254 50
90 % 170 254 55
70 % 170 255 62
50 % 170 255 87
40 % 170 255 108
30 % 170 255 120
Entity #17 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 258 29
95 % 174 263 35
90 % 174 263 40
70 % 174 263 50
50 % 205 368 26
40 % 205 369 36
30 % 205 369 56
Entity #18 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 250 37
95 % 170 255 47
90 % 170 255 52
70 % 170 255 61
50 % 170 255 86
40 % 170 256 107
30 % 201 358 62
Entity #19 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 87 224
95 % 169 249 52
90 % 170 253 56
70 % 170 253 65
50 % 170 253 89
40 % 170 253 111
30 % 170 253 124
Entity #2 | Chains: W
A-Site Messenger RNA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 51 610
95 % 153 220 64
90 % 153 220 69
70 % 153 220 79
50 % 153 220 110
40 % 153 220 132
30 % 153 220 142
Entity #21 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 258 28
95 % 171 258 38
90 % 171 258 44
70 % 171 258 53
50 % 199 358 31
40 % 199 358 41
30 % 199 358 59
Entity #22 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 203 48
95 % 170 254 48
90 % 170 254 53
70 % 170 254 63
50 % 170 254 88
40 % 170 254 109
30 % 170 254 121
Entity #23 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 245 39
95 % 170 245 55
90 % 170 245 60
70 % 170 245 70
50 % 170 245 94
40 % 170 245 118
30 % 170 245 131
Entity #3 | Chains: X
Anticodon Transfer RNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 30
95 % 170 256 40
90 % 170 256 46
70 % 170 256 55
50 % 198 354 34
40 % 198 355 45
30 % 198 355 61
Entity #5 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 219 45
95 % 153 219 65
90 % 153 219 70
70 % 153 219 80
50 % 159 275 80
40 % 159 275 100
30 % 159 275 112
Entity #6 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 248 38
95 % 170 256 41
90 % 170 256 47
70 % 170 256 56
50 % 198 355 33
40 % 198 356 43
30 % 198 356 60
Entity #7 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 255 33
95 % 170 255 44
90 % 170 255 49
70 % 170 255 58
50 % 199 359 30
40 % 199 359 40
30 % 199 361 58
Entity #8 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 260 25
95 % 178 266 34
90 % 178 266 37
70 % 178 266 46
50 % 178 266 84
40 % 178 266 103
30 % 202 312 79
Entity #9 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 259 27
95 % 171 260 37
90 % 171 260 42
70 % 171 260 51
50 % 198 312 54
40 % 198 313 68
30 % 198 313 88

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.