Sequence Similarity Clusters for the Entities in PDB 1XGQ

Entity #1 | Chains: A
antibody kappa light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 4293
95 % 18 25 1874 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 22 33 1303
70 % 834 2287 1
50 % 1707 4633 1
40 % 1707 4633 1
30 % 1921 5461 1
Entity #2 | Chains: B
antibody kappa heavy chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60608
95 % 9 11 5782 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 10 12 5108
70 % 824 2244 2
50 % 1708 4633 1
40 % 1708 4633 1
30 % 1922 5461 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 562 655 3
95 % 613 708 4
90 % 625 725 5
70 % 832 942 7
50 % 837 950 8
40 % 859 984 11
30 % 859 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.