Sequence Similarity Clusters for the Entities in PDB 1XGQ

Entity #1 | Chains: A
antibody kappa light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 4462
95 % 18 29 1654
90 % 22 37 1207
70 % 900 2426 1
50 % 1839 4913 1
40 % 1839 4913 1
30 % 2067 5780 1
Entity #2 | Chains: B
antibody kappa heavy chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62333
95 % 9 11 5965 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 10 12 5292
70 % 886 2376 2
50 % 1840 4913 1
40 % 1840 4913 1
30 % 2068 5780 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 573 666 3
95 % 624 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 636 736 5
70 % 846 956 7
50 % 851 964 8
40 % 873 998 11
30 % 873 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures