Sequence Similarity Clusters for the Entities in PDB 1XGQ

Entity #1 | Chains: A
antibody kappa light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 4538
95 % 19 31 1388
90 % 23 39 1076
70 % 922 2474 1
50 % 1884 5011 1
40 % 1884 5011 1
30 % 2151 5941 1
Entity #2 | Chains: B
antibody kappa heavy chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63061
95 % 9 11 6042 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 10 12 5371
70 % 908 2424 2
50 % 1885 5011 1
40 % 1885 5011 1
30 % 2152 5941 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 574 668 3
95 % 625 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 637 738 5
70 % 849 961 7
50 % 854 969 8
40 % 876 1003 11
30 % 876 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures