Sequence Similarity Clusters for the Entities in PDB 1XGP

Entity #1 | Chains: A
antibody kappa light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 14 4388
95 % 16 31 1424
90 % 19 39 1088
70 % 806 2519 1
50 % 1653 5107 1
40 % 1925 5756 1
30 % 2352 7175 1
Entity #2 | Chains: B
antibody kappa heavy chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56208
95 % 6 11 6235 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 12 5353
70 % 799 2478 2
50 % 1654 5107 1
40 % 1926 5756 1
30 % 2353 7175 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 604 717 3
95 % 619 734 3 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 631 751 5
70 % 843 974 7
50 % 848 982 8
40 % 870 1016 10
30 % 870 1016 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures