Sequence Similarity Clusters for the Entities in PDB 1XGP

Entity #1 | Chains: A
antibody kappa light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 4337
95 % 15 29 1613
90 % 18 37 1178
70 % 735 2327 1
50 % 1506 4713 1
40 % 1506 4713 1
30 % 1693 5567 1
Entity #2 | Chains: B
antibody kappa heavy chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61042
95 % 6 11 5838 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 12 5156
70 % 727 2280 2
50 % 1507 4713 1
40 % 1507 4713 1
30 % 1694 5567 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 548 660 3
95 % 599 713 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 611 730 5
70 % 821 950 7
50 % 826 958 8
40 % 848 992 11
30 % 848 992 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.