Sequence Similarity Clusters for the Entities in PDB 1XGP

Entity #1 | Chains: A
antibody kappa light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 4404
95 % 15 29 1626
90 % 18 37 1190
70 % 756 2385 1
50 % 1550 4827 1
40 % 1550 4827 1
30 % 1742 5688 1
Entity #2 | Chains: B
antibody kappa heavy chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61763
95 % 6 11 5908 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 12 5232
70 % 748 2334 2
50 % 1551 4827 1
40 % 1551 4827 1
30 % 1743 5688 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 553 665 3
95 % 604 718 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 616 735 5
70 % 826 955 7
50 % 831 963 8
40 % 853 997 11
30 % 853 997 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures