Sequence Similarity Clusters for the Entities in PDB 1XFP

Entity #1 | Chains: A
heavy chain antibody protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64726
95 % 1 2 40974 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 6 8727
70 % 46 467 8
50 % 55 698 7
40 % 55 718 7
30 % 71 1101 6
Entity #2 | Chains: L
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 207 728 3
95 % 209 781 5 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 213 798 6
70 % 217 805 10
50 % 233 1031 9
40 % 233 1037 9
30 % 235 1066 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures