Sequence Similarity Clusters for the Entities in PDB 1WM0

Entity #1 | Chains: X
Peroxisome proliferator activated receptor gamma protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 111 130 114
95 % 169 194 110 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.6
PDBFlex
90 % 169 194 115
70 % 132 154 162
50 % 183 214 124
40 % 183 214 144
30 % 561 630 17
Entity #2 | Chains: Y
14-mer from Nuclear receptor coactivator 2 protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures