Sequence Similarity Clusters for the Entities in PDB 1WCM

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 127 237
95 % 89 127 313 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.6
PDBFlex
90 % 89 127 325
70 % 90 132 349
50 % 90 145 385
40 % 90 145 408
30 % 90 145 405
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 162 184
95 % 93 162 236 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 93 162 243
70 % 94 180 231
50 % 99 188 232
40 % 99 188 256
30 % 99 188 274
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 129 233
95 % 89 129 301 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 89 129 313
70 % 89 129 363
50 % 90 134 410
40 % 90 136 427
30 % 90 136 429
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 158 186
95 % 91 158 242 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 91 158 249
70 % 91 158 281
50 % 92 163 301
40 % 92 163 332
30 % 92 163 338
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 129 234
95 % 89 129 307 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.2
PDBFlex
90 % 89 129 318
70 % 90 136 336
50 % 90 147 377
40 % 95 155 361
30 % 174 311 142
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 124 245
95 % 87 124 323 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 87 124 334
70 % 87 124 378
50 % 87 124 447
40 % 87 124 479
30 % 87 124 484
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45747
95 % 1 2 38121
90 % 1 2 36350
70 % 43 69 771
50 % 44 74 750
40 % 44 74 782
30 % 44 74 789
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 163 183
95 % 94 163 233 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 94 163 240
70 % 95 168 255
50 % 95 170 275
40 % 95 181 278
30 % 95 181 294
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 157 187
95 % 91 157 243 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 91 157 250
70 % 91 157 284
50 % 92 176 262
40 % 92 176 288
30 % 92 176 300
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 69 543
95 % 44 69 675 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 44 69 700
70 % 44 69 745
50 % 46 88 565
40 % 46 88 605
30 % 46 88 608
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 92 162 185
95 % 93 163 235 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 93 163 242
70 % 93 163 275
50 % 94 168 285
40 % 94 168 317
30 % 94 182 289
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 128 235
95 % 89 128 308 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 89 128 319
70 % 90 133 345
50 % 90 135 407
40 % 90 135 431
30 % 90 146 404

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures