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COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG
Sequence Clustering and Redundancy Reduction Results
1WCM
Sequence Clusters for the Sequence Entities in PDB 1WCM
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 96 202
95% 71 96 286
90% 71 96 299
70% 71 96 315
50% 71 97 336
40% 71 97 359
30% 71 97 372
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 102 180
95% 75 102 258
90% 75 102 268
70% 75 103 278
50% 75 103 310
40% 79 111 294
30% 79 111 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 98 199
95% 71 98 281
90% 71 98 294
70% 71 98 310
50% 71 98 345
40% 71 99 353
30% 71 99 365
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 101 185
95% 75 101 266
90% 75 101 277
70% 75 101 294
50% 75 101 325
40% 75 101 348
30% 75 101 359
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 97 200
95% 71 98 278
90% 71 98 291
70% 71 98 308
50% 71 99 329
40% 75 107 301
30% 75 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 96 204
95% 71 96 287
90% 71 96 300
70% 71 96 317
50% 71 97 339
40% 71 97 361
30% 71 97 374
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47073
95% 1 1 33019
90% 1 1 31577
70% 1 1 28235
50% 1 1 24339
40% 1 1 21565
30% 1 1 18373
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 103 175
95% 76 103 248
90% 76 103 259
70% 76 103 285
50% 76 104 301
40% 76 104 327
30% 76 104 339
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 100 187
95% 75 100 270
90% 75 100 281
70% 75 100 300
50% 75 102 315
40% 75 102 337
30% 75 102 349
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 51 410
95% 36 51 597
90% 36 51 631
70% 36 51 664
50% 37 53 633
40% 37 53 659
30% 37 53 659
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 102 178
95% 75 103 249
90% 75 103 261
70% 75 103 286
50% 75 103 316
40% 75 103 338
30% 75 105 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 97 201
95% 71 97 285
90% 71 97 298
70% 71 97 314
50% 71 98 333
40% 71 98 356
30% 71 98 369
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.