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COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG
Sequence Clustering and Redundancy Reduction Results
1WCM
Sequence Clusters for the Sequence Entities in PDB 1WCM
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 96 203
95% 71 96 287
90% 71 96 300
70% 71 96 316
50% 71 97 339
40% 71 97 361
30% 71 97 374
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 102 181
95% 75 102 260
90% 75 102 271
70% 75 103 280
50% 75 103 311
40% 79 111 295
30% 79 111 312
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 98 200
95% 71 98 283
90% 71 98 296
70% 71 98 312
50% 71 98 348
40% 71 99 356
30% 71 99 367
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 101 186
95% 75 101 268
90% 75 101 279
70% 75 101 296
50% 75 101 328
40% 75 101 351
30% 75 101 362
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 97 201
95% 71 98 280
90% 71 98 293
70% 71 98 310
50% 71 99 332
40% 75 107 302
30% 75 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 96 205
95% 71 96 288
90% 71 96 301
70% 71 96 318
50% 71 97 342
40% 71 97 363
30% 71 97 376
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47393
95% 1 1 33227
90% 1 1 31781
70% 1 1 28401
50% 1 1 24474
40% 1 1 21681
30% 1 1 18462
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 103 176
95% 76 103 250
90% 76 103 261
70% 76 103 287
50% 76 104 301
40% 76 104 328
30% 76 104 339
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 100 188
95% 75 100 272
90% 75 100 283
70% 75 100 302
50% 75 102 316
40% 75 102 339
30% 75 102 351
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 51 413
95% 36 51 605
90% 36 51 636
70% 36 51 667
50% 37 53 638
40% 37 53 664
30% 37 53 666
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 102 180
95% 75 103 251
90% 75 103 263
70% 75 103 288
50% 75 103 317
40% 75 103 340
30% 75 105 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 97 202
95% 71 97 286
90% 71 97 299
70% 71 97 315
50% 71 98 336
40% 71 98 358
30% 71 98 371
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.