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COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG
Sequence Clustering and Redundancy Reduction Results
1WCM
Sequence Clusters for the Sequence Entities in PDB 1WCM
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 101 206
95% 71 101 290
90% 71 101 305
70% 71 101 324
50% 71 102 349
40% 71 102 376
30% 71 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 107 188
95% 75 107 266
90% 75 107 278
70% 75 108 289
50% 80 116 275
40% 80 116 305
30% 80 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 103 201
95% 71 103 286
90% 71 103 301
70% 71 103 318
50% 71 103 353
40% 71 104 370
30% 71 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 106 190
95% 75 106 268
90% 75 106 282
70% 75 106 300
50% 75 106 328
40% 75 106 358
30% 75 106 366
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 102 203
95% 71 103 283
90% 71 103 297
70% 71 103 316
50% 71 104 340
40% 76 112 319
30% 76 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 101 207
95% 71 101 291
90% 71 101 306
70% 71 101 325
50% 71 102 351
40% 71 102 379
30% 71 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50293
95% 1 1 35199
90% 1 1 33624
70% 1 1 29914
50% 1 1 25714
40% 1 1 22779
30% 1 1 19374
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 108 186
95% 76 108 259
90% 76 108 272
70% 76 108 291
50% 76 109 309
40% 76 109 337
30% 76 109 349
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 105 194
95% 75 105 277
90% 75 105 289
70% 75 105 307
50% 75 107 320
40% 75 107 352
30% 75 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 53 427
95% 36 53 625
90% 36 53 655
70% 36 53 705
50% 37 55 701
40% 37 55 729
30% 37 55 730
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 107 187
95% 75 108 260
90% 75 108 273
70% 75 108 292
50% 75 108 321
40% 75 108 353
30% 75 110 347
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 102 205
95% 71 102 289
90% 71 102 304
70% 71 102 323
50% 71 103 347
40% 71 103 374
30% 71 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.