Sequence Similarity Clusters for the Entities in PDB 1WCM

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 113 203
95 % 80 113 285
90 % 80 113 299
70 % 80 113 323
50 % 80 123 315
40 % 80 123 343
30 % 80 123 353
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 123 159
95 % 84 123 224
90 % 84 123 235
70 % 84 133 214
50 % 89 141 242
40 % 89 141 268
30 % 89 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 115 200
95 % 80 115 282
90 % 80 115 295
70 % 80 115 320
50 % 80 115 344
40 % 80 116 364
30 % 80 116 375
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 119 165
95 % 82 119 235
90 % 82 119 245
70 % 82 119 280
50 % 82 119 314
40 % 82 119 342
30 % 82 119 352
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 114 201
95 % 80 115 278
90 % 80 115 291
70 % 80 115 317
50 % 80 125 308
40 % 85 133 294
30 % 85 136 302
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 110 207
95 % 78 110 294
90 % 78 110 308
70 % 78 110 330
50 % 78 111 349
40 % 78 111 381
30 % 78 111 387
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37534
95 % 1 2 28460
90 % 1 2 27285
70 % 1 2 24500
50 % 41 62 749
40 % 41 62 779
30 % 41 62 786
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 124 152
95 % 85 124 214
90 % 85 124 225
70 % 85 124 258
50 % 85 125 294
40 % 85 134 293
30 % 85 134 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 118 168
95 % 82 118 240
90 % 82 118 251
70 % 82 118 284
50 % 82 129 280
40 % 82 129 307
30 % 82 129 328
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 62 387
95 % 42 62 571
90 % 42 62 603
70 % 42 62 652
50 % 43 73 561
40 % 43 73 596
30 % 43 73 603
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 123 158
95 % 84 124 218
90 % 84 124 228
70 % 84 124 262
50 % 84 124 305
40 % 84 124 327
30 % 84 135 308
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 114 202
95 % 80 114 284
90 % 80 114 298
70 % 80 114 322
50 % 80 115 340
40 % 80 115 369
30 % 80 118 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.