Sequence Similarity Clusters for the Entities in PDB 1WCM

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 115 229
95 % 81 115 321
90 % 81 115 339
70 % 82 120 356
50 % 82 132 368
40 % 82 132 393
30 % 82 132 397
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 142 175
95 % 85 142 236
90 % 85 142 250
70 % 86 159 250
50 % 91 167 246
40 % 91 167 264
30 % 91 167 270
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 117 224
95 % 81 117 315
90 % 81 117 333
70 % 81 117 369
50 % 82 122 416
40 % 82 124 434
30 % 82 124 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 138 183
95 % 83 138 244
90 % 83 138 259
70 % 83 138 289
50 % 84 143 313
40 % 84 143 328
30 % 84 143 336
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 116 226
95 % 81 117 313
90 % 81 117 329
70 % 82 124 339
50 % 82 134 357
40 % 87 142 324
30 % 87 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 112 232
95 % 79 112 326
90 % 79 112 345
70 % 79 112 378
50 % 79 114 439
40 % 79 114 470
30 % 79 114 471
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 42127
95 % 1 2 31912
90 % 1 2 30534
70 % 1 2 27306
50 % 43 69 753
40 % 43 69 785
30 % 43 69 780
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 143 172
95 % 86 143 233
90 % 86 143 248
70 % 87 148 271
50 % 87 150 291
40 % 87 160 284
30 % 87 160 293
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 137 185
95 % 83 137 247
90 % 83 137 262
70 % 83 137 294
50 % 84 155 279
40 % 84 155 298
30 % 84 155 307
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 64 522
95 % 43 64 715
90 % 43 64 745
70 % 43 64 796
50 % 45 82 567
40 % 45 82 605
30 % 45 82 595
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 142 174
95 % 85 143 234
90 % 85 143 249
70 % 85 143 280
50 % 86 148 296
40 % 86 148 311
30 % 86 161 292
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 116 228
95 % 81 116 320
90 % 81 116 338
70 % 82 121 355
50 % 82 123 406
40 % 82 123 436
30 % 82 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.