Sequence Similarity Clusters for the Entities in PDB 1W1W

Entity #1 | Chains: A,B,C,D
STRUCTURAL MAINTENANCE OF CHROMOSOME 1 protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23743
95 % 1 1 21977 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.0
PDBFlex
90 % 1 1 21308
70 % 1 1 19509
50 % 1 1 16852
40 % 1 1 14887
30 % 5 9 2692
Entity #2 | Chains: E,F,G,H
SISTER CHROMATID COHESION PROTEIN 1 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24852
95 % 1 1 21976 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 21307
70 % 1 1 19508
50 % 1 1 16851
40 % 1 1 14886
30 % 1 1 12461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures