Sequence Similarity Clusters for the Entities in PDB 1W1W

Entity #1 | Chains: A,B,C,D
STRUCTURAL MAINTENANCE OF CHROMOSOME 1 protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18087
95 % 1 1 16422 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.0
PDBFlex
90 % 1 1 16109
70 % 1 1 15055
50 % 1 1 13263
40 % 1 1 11979
30 % 2 4 5706
Entity #2 | Chains: E,F,G,H
SISTER CHROMATID COHESION PROTEIN 1 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24010
95 % 1 1 20511 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 19938
70 % 1 1 18341
50 % 1 1 15913
40 % 1 1 14161
30 % 1 1 12115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures