Sequence Similarity Clusters for the Entities in PDB 1W1W

Entity #1 | Chains: A,B,C,D
STRUCTURAL MAINTENANCE OF CHROMOSOME 1 protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18390
95 % 1 1 16675 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.0
PDBFlex
90 % 1 1 16354
70 % 1 1 15273
50 % 1 1 13446
40 % 1 1 12138
30 % 2 4 5795
Entity #2 | Chains: E,F,G,H
SISTER CHROMATID COHESION PROTEIN 1 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24384
95 % 1 1 20809 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 20220
70 % 1 1 18589
50 % 1 1 16114
40 % 1 1 14335
30 % 1 1 12262

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures