Sequence Similarity Clusters for the Entities in PDB 1VYW

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 292 361 21
95 % 303 376 32 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 303 376 34
70 % 303 376 42
50 % 319 401 55
40 % 333 457 42
30 % 2462 3744 2
Entity #2 | Chains: B,D
CYCLIN A2 protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 86 159
95 % 54 105 147 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 58 109 151
70 % 58 109 172
50 % 58 109 203
40 % 58 109 227
30 % 61 115 224

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.