Sequence Similarity Clusters for the Entities in PDB 1VYW

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 292 364 21
95 % 303 379 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 303 379 36
70 % 303 379 43
50 % 319 404 65
40 % 333 460 49
30 % 2560 3886 2
Entity #2 | Chains: B,D
CYCLIN A2 protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 86 167
95 % 54 105 151 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 58 109 158
70 % 58 109 174
50 % 58 109 215
40 % 58 109 235
30 % 61 115 233

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.