Sequence Similarity Clusters for the Entities in PDB 1VYW

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 295 367 23
95 % 307 383 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 307 383 38
70 % 307 383 44
50 % 323 408 73
40 % 337 465 50
30 % 2717 4073 2
Entity #2 | Chains: B,D
CYCLIN A2 protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 86 169
95 % 54 105 155 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 58 109 161
70 % 58 109 178
50 % 58 109 219
40 % 58 109 237
30 % 61 115 243

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures