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The 8S snRNP Assembly Intermediate
Sequence Clustering and Redundancy Reduction Results
1VU3
Sequence Clusters for the Sequence Entities in PDB 1VU3
Entity #1: Chains: A,I,Q,Y,g,o - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 587
95% 5 12 842
90% 5 12 867
70% 5 12 899
50% 5 12 952
40% 5 12 980
30% 5 12 962
Entity #2: Chains: B,J,R,Z,h,p - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 12 588
95% 5 12 843
90% 5 12 868
70% 5 12 900
50% 5 12 954
40% 5 12 982
30% 5 12 964
Entity #3: Chains: C,K,S,a,i,q - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 605
95% 4 11 867
90% 4 11 891
70% 4 11 916
50% 4 11 980
40% 4 11 1010
30% 4 11 995
Entity #4: Chains: D,L,T,b,j,r - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 606
95% 4 11 868
90% 4 11 892
70% 4 11 917
50% 4 11 981
40% 4 11 1012
30% 4 11 997
Entity #5: Chains: E,M,U,c,k,s - LD23602p protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 1727
95% 2 3 2234
90% 2 3 2264
70% 2 3 2298
50% 2 3 2327
40% 2 3 2319
30% 2 3 2175
Entity #6: Chains: F,N,V,d,l,t - CG10419 protein, length: 247 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 1667
95% 2 3 2182
90% 2 3 2216
70% 2 3 2250
50% 2 3 2284
40% 2 3 2284
30% 2 3 2146
Entity #7: Chains: G,O,W,e,m,u - Icln protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 1694
95% 2 3 2206
90% 2 3 2238
70% 2 3 2271
50% 2 3 2303
40% 2 3 2295
30% 2 3 2155
Entity #8: Chains: H,P,X,f,n,v - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 608
95% 4 11 870
90% 4 11 894
70% 4 11 920
50% 4 11 984
40% 4 11 1015
30% 4 11 1000
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.