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The 8S snRNP Assembly Intermediate
Sequence Clustering and Redundancy Reduction Results
1VU2
Sequence Clusters for the Sequence Entities in PDB 1VU2
Entity #1: Chains: A,I,Q,Y,g,o,w - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 582
95% 4 12 834
90% 4 12 859
70% 4 12 892
50% 4 12 945
40% 4 12 973
30% 4 12 955
Entity #2: Chains: B,J,R,Z,h,p,x - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 583
95% 4 12 835
90% 4 12 860
70% 4 12 893
50% 4 12 947
40% 4 12 975
30% 4 12 957
Entity #3: Chains: C,K,S,a,i,q,y - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 599
95% 3 11 860
90% 3 11 884
70% 3 11 910
50% 3 11 976
40% 3 11 1005
30% 3 11 988
Entity #4: Chains: D,L,T,b,j,r,z - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 600
95% 3 11 861
90% 3 11 885
70% 3 11 911
50% 3 11 977
40% 3 11 1007
30% 3 11 990
Entity #5: Chains: 1,E,M,U,c,k,s - LD23602p protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1712
95% 1 3 2217
90% 1 3 2245
70% 1 3 2275
50% 1 3 2307
40% 1 3 2299
30% 1 3 2161
Entity #6: Chains: 2,F,N,V,d,l,t - CG10419 protein, length: 247 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1652
95% 1 3 2165
90% 1 3 2199
70% 1 3 2228
50% 1 3 2264
40% 1 3 2264
30% 1 3 2131
Entity #7: Chains: 3,G,O,W,e,m,u - Icln protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1680
95% 1 3 2189
90% 1 3 2220
70% 1 3 2248
50% 1 3 2283
40% 1 3 2276
30% 1 3 2141
Entity #8: Chains: 4,H,P,X,f,n,v - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 602
95% 3 11 863
90% 3 11 887
70% 3 11 914
50% 3 11 980
40% 3 11 1010
30% 3 11 993
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.