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The 8S snRNP Assembly Intermediate
Sequence Clustering and Redundancy Reduction Results
1VU2
Sequence Clusters for the Sequence Entities in PDB 1VU2
Entity #1: Chains: A,I,Q,Y,g,o,w - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 584
95% 4 12 838
90% 4 12 863
70% 4 12 896
50% 4 12 950
40% 4 12 977
30% 4 12 960
Entity #2: Chains: B,J,R,Z,h,p,x - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 585
95% 4 12 839
90% 4 12 864
70% 4 12 897
50% 4 12 952
40% 4 12 979
30% 4 12 962
Entity #3: Chains: C,K,S,a,i,q,y - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 601
95% 3 11 863
90% 3 11 887
70% 3 11 913
50% 3 11 978
40% 3 11 1007
30% 3 11 992
Entity #4: Chains: D,L,T,b,j,r,z - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 602
95% 3 11 864
90% 3 11 888
70% 3 11 914
50% 3 11 979
40% 3 11 1009
30% 3 11 994
Entity #5: Chains: 1,E,M,U,c,k,s - LD23602p protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1716
95% 1 3 2225
90% 1 3 2253
70% 1 3 2284
50% 1 3 2314
40% 1 3 2309
30% 1 3 2170
Entity #6: Chains: 2,F,N,V,d,l,t - CG10419 protein, length: 247 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1656
95% 1 3 2172
90% 1 3 2206
70% 1 3 2236
50% 1 3 2271
40% 1 3 2273
30% 1 3 2140
Entity #7: Chains: 3,G,O,W,e,m,u - Icln protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1683
95% 1 3 2196
90% 1 3 2227
70% 1 3 2256
50% 1 3 2289
40% 1 3 2284
30% 1 3 2149
Entity #8: Chains: 4,H,P,X,f,n,v - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 604
95% 3 11 866
90% 3 11 890
70% 3 11 917
50% 3 11 982
40% 3 11 1012
30% 3 11 997
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.