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An Information Portal to 105212 Biological Macromolecular Structures

The 8S snRNP Assembly Intermediate
Sequence Clustering and Redundancy Reduction Results
1VU2
Sequence Clusters for the Sequence Entities in PDB 1VU2
Entity #1: Chains: A,I,Q,Y,g,o,w - Small nuclear ribonucleoprotein Sm D1 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 665
95% 4 12 925
90% 4 12 946
70% 4 12 980
50% 4 12 1023
40% 4 12 1051
30% 4 12 1025
Entity #2: Chains: B,J,R,Z,h,p,x - Small nuclear ribonucleoprotein Sm D2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 666
95% 4 12 926
90% 4 12 947
70% 4 12 981
50% 4 12 1025
40% 4 12 1053
30% 4 12 1027
Entity #3: Chains: C,K,S,a,i,q,y - Small nuclear ribonucleoprotein E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 681
95% 3 11 956
90% 3 11 975
70% 3 11 1001
50% 3 11 1054
40% 3 11 1084
30% 3 11 1061
Entity #4: Chains: D,L,T,b,j,r,z - Small nuclear ribonucleoprotein F protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 682
95% 3 11 957
90% 3 11 976
70% 3 11 1002
50% 3 11 1055
40% 3 11 1086
30% 3 11 1063
Entity #5: Chains: 1,E,M,U,c,k,s - LD23602p protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1833
95% 1 3 2344
90% 1 3 2372
70% 1 3 2390
50% 1 3 2380
40% 1 3 2360
30% 1 3 2211
Entity #6: Chains: 2,F,N,V,d,l,t - CG10419 protein, length: 247 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1773
95% 1 3 2291
90% 1 3 2323
70% 1 3 2337
50% 1 3 2333
40% 1 3 2321
30% 1 3 2180
Entity #7: Chains: 3,G,O,W,e,m,u - Icln protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 1800
95% 1 3 2315
90% 1 3 2345
70% 1 3 2359
50% 1 3 2351
40% 1 3 2332
30% 1 3 2188
Entity #8: Chains: 4,H,P,X,f,n,v - Small nuclear ribonucleoprotein G protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 685
95% 3 11 960
90% 3 11 979
70% 3 11 1006
50% 3 11 1059
40% 3 11 1090
30% 3 11 1067
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.