Sequence Similarity Clusters for the Entities in PDB 1VQL

Entity #1 | Chains: 0
23S ribosomal rna rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 44 852
95 % 9 64 754
90 % 9 64 786
70 % 9 64 826
50 % 9 64 879
40 % 9 64 903
30 % 9 65 877
Entity #11 | Chains: H
50S RIBOSOMAL PROTEIN L10E protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 47 801
95 % 9 47 1095
90 % 9 47 1115
70 % 9 47 1153
50 % 10 74 742
40 % 10 79 723
30 % 10 79 719
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 449
95 % 10 74 620
90 % 10 74 648
70 % 10 74 693
50 % 10 74 747
40 % 11 77 745
30 % 11 78 731
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 1971
95 % 10 68 698
90 % 10 68 728
70 % 10 68 780
50 % 10 180 201
40 % 13 537 20
30 % 13 537 33
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 447
95 % 10 74 619
90 % 10 74 647
70 % 10 74 690
50 % 10 74 743
40 % 10 74 778
30 % 12 517 37
Entity #15 | Chains: M
50S Ribosomal Protein L15E protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 1920
95 % 9 47 1093
90 % 9 47 1112
70 % 10 68 771
50 % 10 176 205
40 % 10 176 228
30 % 10 176 240
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 445
95 % 10 74 617
90 % 10 74 645
70 % 10 74 687
50 % 10 76 718
40 % 10 76 753
30 % 10 79 717
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 513
95 % 10 68 700
90 % 10 68 731
70 % 10 68 783
50 % 10 70 793
40 % 10 70 830
30 % 10 70 817
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 47 803
95 % 10 68 697
90 % 10 68 727
70 % 10 68 778
50 % 10 68 822
40 % 10 72 805
30 % 10 72 796
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 514
95 % 10 68 702
90 % 10 68 733
70 % 10 68 785
50 % 10 70 794
40 % 10 70 831
30 % 10 71 807
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 67 523
95 % 10 68 695
90 % 10 68 725
70 % 10 68 775
50 % 10 68 819
40 % 10 68 856
30 % 10 179 231
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 452
95 % 10 74 623
90 % 10 74 651
70 % 10 74 697
50 % 10 76 723
40 % 10 78 734
30 % 12 419 59
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 451
95 % 10 74 622
90 % 10 74 650
70 % 10 74 695
50 % 10 183 199
40 % 10 184 217
30 % 10 184 227
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 70 483
95 % 10 70 668
90 % 10 70 694
70 % 10 70 746
50 % 10 70 795
40 % 10 70 832
30 % 10 70 819
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 453
95 % 10 74 624
90 % 10 74 652
70 % 10 74 698
50 % 10 74 748
40 % 12 384 58
30 % 12 410 65
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 510
95 % 10 68 696
90 % 10 68 726
70 % 10 68 776
50 % 10 68 820
40 % 10 70 828
30 % 10 71 805
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 516
95 % 10 68 704
90 % 10 68 735
70 % 10 68 787
50 % 10 46 827
40 % 10 68 860
30 % 10 68 844
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 63 560
95 % 10 63 779
90 % 10 63 807
70 % 10 63 849
50 % 10 63 898
40 % 10 63 924
30 % 10 63 905
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 20 2534
95 % 7 23 2665
90 % 7 23 2710
70 % 7 23 2690
50 % 7 23 2657
40 % 7 23 2620
30 % 9 157 261
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 517
95 % 10 68 705
90 % 10 68 736
70 % 10 68 788
50 % 10 69 809
40 % 10 69 844
30 % 10 69 833
Entity #3 | Chains: 4
5'-R(*CP*CP*(PPU)*(TSE)*(DA)*CP*C)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 47 808
95 % 10 68 706
90 % 10 68 737
70 % 10 68 789
50 % 10 177 203
40 % 10 177 225
30 % 10 177 236
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 515
95 % 10 68 703
90 % 10 68 734
70 % 10 68 786
50 % 10 68 826
40 % 10 46 859
30 % 10 173 244
Entity #32 | Chains: I
50S RIBOSOMAL PROTEIN L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 42 913
95 % 9 42 1237
90 % 9 42 1267
70 % 9 42 1296
50 % 10 46 1171
40 % 10 46 1182
30 % 10 85 631
Entity #4 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 47 798
95 % 10 68 692
90 % 10 68 721
70 % 10 68 770
50 % 10 175 204
40 % 10 177 224
30 % 10 177 235
Entity #5 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 67 521
95 % 10 74 609
90 % 10 74 639
70 % 10 74 683
50 % 10 74 736
40 % 10 184 215
30 % 10 184 225
Entity #6 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 44 859
95 % 10 74 613
90 % 10 74 643
70 % 10 74 685
50 % 10 74 738
40 % 10 76 751
30 % 11 78 727
Entity #7 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 446
95 % 10 74 618
90 % 10 74 646
70 % 10 74 688
50 % 10 74 741
40 % 11 184 216
30 % 11 184 226
Entity #8 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 509
95 % 10 68 694
90 % 10 68 723
70 % 10 68 773
50 % 10 68 818
40 % 10 178 222
30 % 13 523 35
Entity #9 | Chains: F
50S ribosomal protein L7AE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 47 804
95 % 9 47 1097
90 % 10 68 730
70 % 10 68 782
50 % 20 105 351
40 % 25 124 285
30 % 25 126 289

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.