Sequence Similarity Clusters for the Entities in PDB 1VQL

Entity #1 | Chains: 0
23S ribosomal rna rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 44 867
95 % 9 64 758 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 64 791
70 % 9 64 834
50 % 9 64 891
40 % 9 64 913
30 % 9 65 888
Entity #11 | Chains: H
50S RIBOSOMAL PROTEIN L10E protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 47 812
95 % 9 47 1112 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 47 1133
70 % 9 47 1172
50 % 10 74 753
40 % 10 79 729
30 % 10 79 726
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 74 453
95 % 10 74 628 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 10 74 657
70 % 10 74 703
50 % 10 74 758
40 % 11 77 751
30 % 11 78 742
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 24 2012
95 % 10 68 706 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 10 68 736
70 % 10 68 793
50 % 10 180 204
40 % 13 543 20
30 % 13 543 33
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 74 451
95 % 10 74 627 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 10 74 656
70 % 10 74 700
50 % 10 74 754
40 % 10 74 790
30 % 12 523 37
Entity #15 | Chains: M
50S Ribosomal Protein L15E protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 24 1963
95 % 9 47 1110 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 9 47 1130
70 % 10 68 784
50 % 10 176 209
40 % 10 176 232
30 % 10 176 243
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 74 449
95 % 10 74 625 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 10 74 654
70 % 10 74 697
50 % 10 76 727
40 % 10 76 762
30 % 10 79 724
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 68 519
95 % 10 68 708 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 10 68 739
70 % 10 68 796
50 % 10 70 805
40 % 10 70 843
30 % 10 70 828
Entity #18 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 47 814
95 % 10 68 705 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 10 68 735
70 % 10 68 792
50 % 10 68 836
40 % 10 72 817
30 % 10 72 804
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 68 520
95 % 10 68 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 10 68 741
70 % 10 68 798
50 % 10 70 807
40 % 10 70 844
30 % 10 71 815
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 67 529
95 % 10 68 703 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 10 68 733
70 % 10 68 789
50 % 10 68 833
40 % 10 68 868
30 % 10 179 234
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 74 456
95 % 10 74 631 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 10 74 660
70 % 10 74 707
50 % 10 76 733
40 % 10 78 742
30 % 12 426 60
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 74 455
95 % 10 74 630 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 10 74 659
70 % 10 74 705
50 % 10 183 201
40 % 10 184 220
30 % 10 184 230
Entity #23 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 70 488
95 % 10 70 678 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 10 70 704
70 % 10 70 760
50 % 10 70 808
40 % 10 70 845
30 % 10 70 830
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 74 457
95 % 10 74 632
90 % 10 74 661
70 % 10 74 708
50 % 10 74 759
40 % 12 387 53
30 % 12 413 65
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 68 516
95 % 10 68 704
90 % 10 68 734
70 % 10 68 790
50 % 10 68 834
40 % 10 70 842
30 % 10 71 813
Entity #26 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 68 522
95 % 10 68 712 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 10 68 743
70 % 10 68 800
50 % 10 68 841
40 % 10 68 872
30 % 10 68 856
Entity #27 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 63 567
95 % 10 63 785 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 10 63 814
70 % 10 63 857
50 % 10 63 912
40 % 10 63 937
30 % 10 63 917
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 20 2590
95 % 7 23 2711
90 % 7 23 2757
70 % 7 23 2733
50 % 7 23 2696
40 % 7 23 2659
30 % 9 157 267
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 68 523
95 % 10 68 713 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 10 68 744
70 % 10 68 801
50 % 10 69 821
40 % 10 69 856
30 % 10 69 843
Entity #3 | Chains: 4
5'-R(*CP*CP*(PPU)*(TSE)*(DA)*CP*C)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 47 819
95 % 10 68 714 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 10 68 745
70 % 10 68 802
50 % 10 177 206
40 % 10 177 229
30 % 10 177 238
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 68 521
95 % 10 68 711 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 10 68 742
70 % 10 68 799
50 % 10 68 840
40 % 10 68 871
30 % 10 173 246
Entity #32 | Chains: I
50S RIBOSOMAL PROTEIN L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 42 930
95 % 9 42 1252
90 % 9 42 1283
70 % 9 42 1313
50 % 10 46 1183
40 % 10 46 1198
30 % 10 85 637
Entity #4 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 47 809
95 % 10 68 699 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 10 68 728
70 % 10 68 783
50 % 10 175 208
40 % 10 177 228
30 % 10 177 237
Entity #5 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 67 527
95 % 10 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 10 74 648
70 % 10 74 692
50 % 10 74 745
40 % 10 184 218
30 % 10 184 227
Entity #6 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 44 874
95 % 10 74 620 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 10 74 651
70 % 10 74 694
50 % 10 74 747
40 % 10 76 759
30 % 11 78 738
Entity #7 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 74 450
95 % 10 74 626 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 10 74 655
70 % 10 74 698
50 % 10 74 752
40 % 11 184 219
30 % 11 184 229
Entity #8 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 68 515
95 % 10 68 702 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 10 68 731
70 % 10 68 787
50 % 10 68 832
40 % 10 178 225
30 % 13 534 36
Entity #9 | Chains: F
50S ribosomal protein L7AE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 47 815
95 % 9 47 1114 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 68 738
70 % 10 68 795
50 % 20 105 357
40 % 25 126 286
30 % 25 128 288

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.