Sequence Similarity Clusters for the Entities in PDB 1VFB

Entity #1 | Chains: A
IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 13572
95 % 4 17 3723 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 4 21 2951
70 % 27 188 71
50 % 49 302 22
40 % 153 887 5
30 % 169 1013 7
Entity #2 | Chains: B
IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 5694
95 % 4 17 3718 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 17 3762
70 % 4 36 1224
50 % 99 540 8
40 % 154 887 5
30 % 170 1013 7
Entity #3 | Chains: C
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 344 646 3
95 % 381 699 4
90 % 388 716 5
70 % 544 933 7
50 % 544 941 7
40 % 548 975 11
30 % 548 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.