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An Information Portal to 105097 Biological Macromolecular Structures

BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION
Sequence Clustering and Redundancy Reduction Results
1VFB
Sequence Clusters for the Sequence Entities in PDB 1VFB
Entity #1: Chains: A - IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10331
95% 4 17 2811
90% 4 17 2853
70% 22 148 67
50% 37 223 31
40% 107 605 8
30% 122 716 8
Entity #2: Chains: B - IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 4222
95% 4 17 2807
90% 4 17 2849
70% 4 30 1117
50% 67 340 13
40% 108 605 8
30% 123 716 8
Entity #3: Chains: C - HEN EGG WHITE LYSOZYME protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 242 490 3
95% 275 539 4
90% 282 556 4
70% 437 771 6
50% 437 780 6
40% 441 814 9
30% 441 814 14
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.