POP-OUT | CLOSE

An Information Portal to 111558 Biological Macromolecular Structures

BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION
Sequence Clustering and Redundancy Reduction Results
1VFB
Sequence Clusters for the Sequence Entities in PDB 1VFB
Entity #1: Chains: A - IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 11110
95% 4 17 3065
90% 4 19 2712
70% 26 160 53
50% 42 248 23
40% 122 675 6
30% 137 786 8
Entity #2: Chains: B - IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 4580
95% 4 17 3061
90% 4 17 3107
70% 4 30 1186
50% 77 385 10
40% 123 675 6
30% 138 786 8
Entity #3: Chains: C - HEN EGG WHITE LYSOZYME protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 267 544 3
95% 304 597 4
90% 311 614 5
70% 466 829 6
50% 466 838 6
40% 470 872 10
30% 470 872 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.