Sequence Similarity Clusters for the Entities in PDB 1VFB

Entity #1 | Chains: A
IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 14119
95 % 4 17 3862 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 4 21 3066
70 % 27 191 73
50 % 49 308 22
40 % 163 936 5
30 % 180 1065 7
Entity #2 | Chains: B
IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 5926
95 % 4 17 3858 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 17 3905
70 % 4 36 1263
50 % 109 583 7
40 % 164 936 5
30 % 181 1065 7
Entity #3 | Chains: C
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 358 665 3
95 % 395 718 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 402 735 5
70 % 561 955 7
50 % 561 963 8
40 % 565 997 11
30 % 565 997 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures