Sequence Similarity Clusters for the Entities in PDB 1VFB

Entity #1 | Chains: A
IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 13765
95 % 4 17 3763 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 4 21 2986
70 % 27 191 72
50 % 49 305 21
40 % 159 916 5
30 % 175 1042 7
Entity #2 | Chains: B
IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 5764
95 % 4 17 3759 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 17 3804
70 % 4 36 1236
50 % 105 566 7
40 % 160 916 5
30 % 176 1042 7
Entity #3 | Chains: C
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 346 651 3
95 % 383 704 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 390 721 5
70 % 546 938 7
50 % 546 946 8
40 % 550 980 11
30 % 550 980 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.