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An Information Portal to 109822 Biological Macromolecular Structures

BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION
Sequence Clustering and Redundancy Reduction Results
1VFB
Sequence Clusters for the Sequence Entities in PDB 1VFB
Entity #1: Chains: A - IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10869
95% 4 17 2959
90% 4 19 2623
70% 26 158 83
50% 42 239 37
40% 121 653 9
30% 136 764 8
Entity #2: Chains: B - IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 4474
95% 4 17 2955
90% 4 17 3001
70% 4 30 1166
50% 76 372 11
40% 122 653 9
30% 137 764 8
Entity #3: Chains: C - HEN EGG WHITE LYSOZYME protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 265 534 3
95% 302 587 4
90% 309 604 5
70% 464 819 6
50% 464 828 6
40% 468 862 10
30% 468 862 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.