Sequence Similarity Clusters for the Entities in PDB 1VFB

Entity #1 | Chains: A
IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 13391
95 % 4 17 3672
90 % 4 21 2912
70 % 27 183 75
50 % 49 297 22
40 % 152 874 5
30 % 168 1000 7
Entity #2 | Chains: B
IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 5610
95 % 4 17 3667 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 17 3712
70 % 4 32 1352
50 % 98 532 8
40 % 153 874 5
30 % 169 1000 7
Entity #3 | Chains: C
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 342 641 3
95 % 379 694 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 386 711 5
70 % 542 928 7
50 % 542 936 7
40 % 546 970 11
30 % 546 970 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.