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An Information Portal to 108395 Biological Macromolecular Structures

BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION
Sequence Clustering and Redundancy Reduction Results
1VFB
Sequence Clusters for the Sequence Entities in PDB 1VFB
Entity #1: Chains: A - IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10721
95% 4 17 2924
90% 4 19 2599
70% 22 151 71
50% 38 232 32
40% 113 636 9
30% 128 747 8
Entity #2: Chains: B - IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 4410
95% 4 17 2920
90% 4 17 2965
70% 4 30 1153
50% 72 362 11
40% 114 636 9
30% 129 747 8
Entity #3: Chains: C - HEN EGG WHITE LYSOZYME protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 262 520 3
95% 295 569 4
90% 302 586 4
70% 457 801 6
50% 457 810 6
40% 461 844 10
30% 461 844 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.