Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6892
95 % 11 12 5191 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 5214
70 % 12 13 4954
50 % 12 13 4696
40 % 12 13 4434
30 % 12 13 3987
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6893
95 % 8 9 7027 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 5213
70 % 12 13 4933
50 % 12 13 4681
40 % 12 13 4420
30 % 12 13 3986
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6940
95 % 8 9 7072 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 8 9 7036
70 % 10 11 5699
50 % 11 12 5036
40 % 11 12 4740
30 % 11 12 4252
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 6894
95 % 8 9 7028
90 % 8 9 6991
70 % 11 12 5081
50 % 11 12 4826
40 % 11 12 4541
30 % 11 12 4077
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6895
95 % 8 9 7029 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 8 9 6992
70 % 8 9 6779
50 % 8 9 6275
40 % 8 9 5829
30 % 8 9 5108
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6896
95 % 8 9 7030 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6993
70 % 11 12 5079
50 % 11 12 4824
40 % 11 12 4539
30 % 11 12 4075
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 6897
95 % 8 9 7031
90 % 8 9 6994
70 % 11 12 5080
50 % 11 12 4825
40 % 11 12 4540
30 % 11 12 4076
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6891
95 % 8 9 7026 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6990
70 % 11 12 5078
50 % 12 13 4538
40 % 12 13 4286
30 % 12 13 3868

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4OGQ 7 G Cytochrome b6-f complex subunit 5 103690
2 4H44 7 G Cytochrome b6-f complex subunit 5 103690
3 4PV1 7 G Cytochrome b6-f complex subunit 5 83541
4 4H13 7 G Cytochrome b6-f complex subunit 5 83541
5 2E74 7 G Cytochrome b6-f complex subunit 5 83541
6 4I7Z 7 G Cytochrome b6-f complex subunit 5 83541
7 2E76 7 G Cytochrome b6-f complex subunit 5 83541
8 2ZT9 7 G Cytochrome b6-f complex subunit 5 103690
9 4H0L 7 G Cytochrome b6-f complex subunit 5 83541
10 2E75 7 G Cytochrome b6-f complex subunit 5 83541
11 1VF5 7 G, T PROTEIN PET G 83541
12 2D2C 7 G, T Cytochrome b6-f complex subunit V 83541