Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6575
95 % 11 12 5216 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 5234
70 % 12 13 4756
50 % 12 13 4555
40 % 12 13 4304
30 % 12 13 3875
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6576
95 % 8 9 6713 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 4993
70 % 12 13 4736
50 % 12 13 4539
40 % 12 13 4291
30 % 12 13 3874
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6618
95 % 8 9 6752 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6734
70 % 10 11 5484
50 % 11 12 4863
40 % 11 12 4592
30 % 11 12 4123
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6577
95 % 8 9 6714 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 6695
70 % 11 12 4868
50 % 11 12 4664
40 % 11 12 4400
30 % 11 12 3956
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6578
95 % 8 9 6715 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 6696
70 % 8 9 6507
50 % 8 9 6060
40 % 8 9 5641
30 % 8 9 4945
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6579
95 % 8 9 6716 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6697
70 % 11 12 4866
50 % 11 12 4662
40 % 11 12 4398
30 % 11 12 3954
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6580
95 % 8 9 6717 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 6698
70 % 11 12 4867
50 % 11 12 4663
40 % 11 12 4399
30 % 11 12 3955
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6574
95 % 8 9 6712 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6694
70 % 11 12 4865
50 % 12 13 4394
40 % 12 13 4161
30 % 12 13 3759

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PV1 5 E Cytochrome b6-f complex subunit 6 83541
2 4H13 5 E Cytochrome b6-f complex subunit 6 83541
3 2E74 5 E Cytochrome b6-f complex subunit 6 83541
4 4I7Z 5 E Cytochrome b6-f complex subunit 6 83541
5 2E76 5 E Cytochrome b6-f complex subunit 6 83541
6 4H0L 5 E Cytochrome b6-f complex subunit 6 83541
7 2E75 5 E Cytochrome b6-f complex subunit 6 83541
8 1VF5 5 E, R PROTEIN PET L 83541
9 2D2C 5 E, R Cytochrome b6-f complex subunit VI 83541