Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6739
95 % 11 12 5070 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 5098
70 % 12 13 4844
50 % 12 13 4621
40 % 12 13 4358
30 % 12 13 3921
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6740
95 % 8 9 6872 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 5097
70 % 12 13 4823
50 % 12 13 4605
40 % 12 13 4346
30 % 12 13 3920
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6785
95 % 8 9 6918 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6889
70 % 10 11 5586
50 % 11 12 4942
40 % 11 12 4657
30 % 11 12 4177
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6741
95 % 8 9 6873 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 6843
70 % 11 12 4961
50 % 11 12 4739
40 % 11 12 4462
30 % 11 12 4007
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6742
95 % 8 9 6874 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 6844
70 % 8 9 6636
50 % 8 9 6155
40 % 8 9 5719
30 % 8 9 5007
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6743
95 % 8 9 6875 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6845
70 % 11 12 4959
50 % 11 12 4737
40 % 11 12 4460
30 % 11 12 4005
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6744
95 % 8 9 6876 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 6846
70 % 11 12 4960
50 % 11 12 4738
40 % 11 12 4461
30 % 11 12 4006
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6738
95 % 8 9 6871 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6842
70 % 11 12 4958
50 % 12 13 4462
40 % 12 13 4216
30 % 12 13 3806

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4H44 3 C Apocytochrome f 103690
2 4PV1 3 C Apocytochrome f UNP RESIDUES 45-333 83541
3 4H13 3 C Apocytochrome f 83541
4 2E74 3 C Apocytochrome f 83541
5 4I7Z 3 C Apocytochrome f UNP residues 45-333 83541
6 2E76 3 C Apocytochrome f 83541
7 2ZT9 3 C Apocytochrome f 103690
8 4H0L 3 C Apocytochrome f 83541
9 2E75 3 C Apocytochrome f 83541
10 1VF5 3 C, P CYTOCHROME F 83541
11 2D2C 3 C, P Apocytochrome f 83541