Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6400
95 % 11 12 4819 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 4860
70 % 12 13 4616
50 % 12 13 4433
40 % 12 13 4184
30 % 12 13 3780
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6401
95 % 8 9 6549 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 4859
70 % 12 13 4598
50 % 12 13 4418
40 % 12 13 4183
30 % 12 13 3779
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6443
95 % 8 9 6594 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6584
70 % 10 11 5345
50 % 11 12 4748
40 % 11 12 4473
30 % 11 12 4032
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6402
95 % 8 9 6550 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 6539
70 % 11 12 4737
50 % 11 12 4541
40 % 11 12 4279
30 % 11 12 3862
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6403
95 % 8 9 6551 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 6540
70 % 8 9 6344
50 % 8 9 5917
40 % 8 9 5509
30 % 8 9 4836
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6404
95 % 8 9 6552 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6541
70 % 11 12 4735
50 % 11 12 4539
40 % 11 12 4277
30 % 11 12 3860
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6405
95 % 8 9 6553 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 6542
70 % 11 12 4736
50 % 11 12 4540
40 % 11 12 4278
30 % 11 12 3861
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6399
95 % 8 9 6548 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6538
70 % 11 12 4734
50 % 12 13 4277
40 % 12 13 4047
30 % 12 13 3667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4OGQ 2 B Cytochrome b6-f complex subunit 4 103690
2 4H44 2 B Cytochrome b6-f complex subunit 4 103690
3 4PV1 2 B Cytochrome b6-f complex subunit 4 83541
4 4H13 2 B Cytochrome b6-f complex subunit 4 83541
5 2E74 2 B Cytochrome b6-f complex subunit 4 83541
6 4I7Z 2 B Cytochrome b6-f complex subunit 4 83541
7 2E76 2 B Cytochrome b6-f complex subunit 4 83541
8 2ZT9 2 B Cytochrome b6-f complex subunit 4 103690
9 1Q90 4 D Cytochrome b6-f complex subunit 4 Residues 4-159 3055
10 4H0L 2 B Cytochrome b6-f complex subunit 4 83541
11 2E75 2 B Cytochrome b6-f complex subunit 4 83541
12 1VF5 2 B, O SUBUNIT IV 83541
13 2D2C 2 B, O Cytochrome b6-f complex subunit 4 83541