Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6752
95 % 11 12 5076 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 5104
70 % 12 13 4849
50 % 12 13 4626
40 % 12 13 4366
30 % 12 13 3934
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6753
95 % 8 9 6882 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 5103
70 % 12 13 4829
50 % 12 13 4611
40 % 12 13 4355
30 % 12 13 3933
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6798
95 % 8 9 6928 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6898
70 % 10 11 5589
50 % 11 12 4948
40 % 11 12 4664
30 % 11 12 4189
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6754
95 % 8 9 6883 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 6852
70 % 11 12 4965
50 % 11 12 4745
40 % 11 12 4469
30 % 11 12 4018
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6755
95 % 8 9 6884 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 6853
70 % 8 9 6647
50 % 8 9 6169
40 % 8 9 5731
30 % 8 9 5024
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6756
95 % 8 9 6885 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6854
70 % 11 12 4963
50 % 11 12 4743
40 % 11 12 4467
30 % 11 12 4016
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6757
95 % 8 9 6886 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 6855
70 % 11 12 4964
50 % 11 12 4744
40 % 11 12 4468
30 % 11 12 4017
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6751
95 % 8 9 6881 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6851
70 % 11 12 4962
50 % 12 13 4472
40 % 12 13 4229
30 % 12 13 3823

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PV1 1 A Cytochrome b6 83541
2 4H13 1 A Cytochrome b6 83541
3 2E74 1 A Cytochrome b6 83541
4 4I7Z 1 A Cytochrome b6 83541
5 2E76 1 A Cytochrome b6 83541
6 4H0L 1 A Cytochrome b6 83541
7 2E75 1 A Cytochrome b6 83541
8 1VF5 1 A, N CYTOCHROME B6 83541
9 2D2C 1 A, N Cytochrome b6 83541