Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6565
95 % 11 12 5212 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 5233
70 % 12 13 4752
50 % 12 13 4551
40 % 12 13 4296
30 % 12 13 3872
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6566
95 % 8 9 6705 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 4990
70 % 12 13 4732
50 % 12 13 4535
40 % 12 13 4295
30 % 12 13 3871
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6607
95 % 8 9 6744 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6725
70 % 10 11 5481
50 % 11 12 4863
40 % 11 12 4590
30 % 11 12 4123
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6567
95 % 8 9 6706 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 6686
70 % 11 12 4864
50 % 11 12 4660
40 % 11 12 4394
30 % 11 12 3953
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6568
95 % 8 9 6707 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 6687
70 % 8 9 6499
50 % 8 9 6056
40 % 8 9 5637
30 % 8 9 4941
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6569
95 % 8 9 6708 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6688
70 % 11 12 4862
50 % 11 12 4658
40 % 11 12 4392
30 % 11 12 3951
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6570
95 % 8 9 6709 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 6689
70 % 11 12 4863
50 % 11 12 4659
40 % 11 12 4393
30 % 11 12 3952
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6564
95 % 8 9 6704 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6685
70 % 11 12 4861
50 % 12 13 4390
40 % 12 13 4154
30 % 12 13 3756

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4PV1 1 A Cytochrome b6 83541
2 4H13 1 A Cytochrome b6 83541
3 2E74 1 A Cytochrome b6 83541
4 4I7Z 1 A Cytochrome b6 83541
5 2E76 1 A Cytochrome b6 83541
6 4H0L 1 A Cytochrome b6 83541
7 2E75 1 A Cytochrome b6 83541
8 1VF5 1 A, N CYTOCHROME B6 83541
9 2D2C 1 A, N Cytochrome b6 83541