Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6507
95 % 11 12 5244 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 5282
70 % 12 13 4921
50 % 12 13 4760
40 % 12 13 4646
30 % 12 13 4461
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20211
95 % 8 9 7509 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 5723
70 % 12 13 5189
50 % 12 13 4795
40 % 12 13 4681
30 % 12 13 4495
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6538
95 % 8 9 7170 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 7167
70 % 10 11 5866
50 % 11 12 5293
40 % 11 12 5165
30 % 11 12 4919
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20484
95 % 8 9 7172 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 7169
70 % 11 12 5210
50 % 11 12 5049
40 % 11 12 4934
30 % 11 12 4703
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6588
95 % 8 9 7239 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 7121
70 % 8 9 6987
50 % 8 9 6704
40 % 8 9 6465
30 % 8 9 5986
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6792
95 % 8 9 7455 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 7440
70 % 11 12 5566
50 % 11 12 5383
40 % 11 12 5253
30 % 11 12 4990
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6504
95 % 8 9 7125 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 7236
70 % 11 12 5400
50 % 11 12 5222
40 % 11 12 4935
30 % 11 12 4721
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6505
95 % 8 9 7126 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 7122
70 % 11 12 5238
50 % 12 13 4753
40 % 12 13 4653
30 % 12 13 4455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures