Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6805
95 % 11 12 5124 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 5153
70 % 12 13 4896
50 % 12 13 4655
40 % 12 13 4398
30 % 12 13 3959
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6806
95 % 8 9 6941 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 5152
70 % 12 13 4876
50 % 12 13 4641
40 % 12 13 4386
30 % 12 13 3958
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6851
95 % 8 9 6986 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6957
70 % 10 11 5641
50 % 11 12 4986
40 % 11 12 4702
30 % 11 12 4220
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6807
95 % 8 9 6942 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 6912
70 % 11 12 5018
50 % 11 12 4778
40 % 11 12 4503
30 % 11 12 4045
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6808
95 % 8 9 6943 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 6913
70 % 8 9 6705
50 % 8 9 6208
40 % 8 9 5771
30 % 8 9 5054
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6809
95 % 8 9 6944 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6914
70 % 11 12 5016
50 % 11 12 4776
40 % 11 12 4501
30 % 11 12 4043
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6810
95 % 8 9 6945 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 6915
70 % 11 12 5017
50 % 11 12 4777
40 % 11 12 4502
30 % 11 12 4044
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6804
95 % 8 9 6940 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6911
70 % 11 12 5015
50 % 12 13 4499
40 % 12 13 4255
30 % 12 13 3842

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures