Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6492
95 % 11 12 4888 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 11 12 4925
70 % 12 13 4681
50 % 12 13 4487
40 % 12 13 4238
30 % 12 13 3825
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6493
95 % 8 9 6634 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 4924
70 % 12 13 4662
50 % 12 13 4471
40 % 12 13 4237
30 % 12 13 3824
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6538
95 % 8 9 6680 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6664
70 % 10 11 5411
50 % 11 12 4800
40 % 11 12 4532
30 % 11 12 4078
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6494
95 % 8 9 6635 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 8 9 6619
70 % 11 12 4796
50 % 11 12 4595
40 % 11 12 4335
30 % 11 12 3906
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6495
95 % 8 9 6636 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 8 9 6620
70 % 8 9 6424
50 % 8 9 5993
40 % 8 9 5579
30 % 8 9 4892
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6496
95 % 8 9 6637 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6621
70 % 11 12 4794
50 % 11 12 4593
40 % 11 12 4333
30 % 11 12 3904
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6497
95 % 8 9 6638 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 8 9 6622
70 % 11 12 4795
50 % 11 12 4594
40 % 11 12 4334
30 % 11 12 3905
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6491
95 % 8 9 6633 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6618
70 % 11 12 4793
50 % 12 13 4330
40 % 12 13 4100
30 % 12 13 3715

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures