Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4712
95 % 11 12 3976
90 % 11 12 4006
70 % 12 13 3686
50 % 12 13 3571
40 % 12 13 3423
30 % 12 13 3172
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18858
95 % 8 9 5400
90 % 11 12 4061
70 % 12 13 3709
50 % 12 13 3595
40 % 12 13 3449
30 % 12 13 3195
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4664
95 % 8 9 5295
90 % 8 9 5296
70 % 10 11 4203
50 % 11 12 3765
40 % 11 12 3603
30 % 11 12 3341
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18497
95 % 8 9 5384
90 % 8 9 5381
70 % 11 12 3984
50 % 11 12 3848
40 % 11 12 3670
30 % 11 12 3390
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4833
95 % 8 9 5479
90 % 8 9 5473
70 % 8 9 5360
50 % 8 9 5055
40 % 8 9 4731
30 % 8 9 4280
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4831
95 % 8 9 5477
90 % 8 9 5471
70 % 11 12 4094
50 % 11 12 3942
40 % 11 12 3757
30 % 11 12 3470
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4829
95 % 8 9 5474
90 % 8 9 5469
70 % 11 12 4093
50 % 11 12 3941
40 % 11 12 3756
30 % 11 12 3469
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4834
95 % 8 9 5481
90 % 8 9 5475
70 % 11 12 4098
50 % 11 12 3946
40 % 11 12 3761
30 % 11 12 3474

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.