Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6362
95 % 11 12 4795 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 11 12 4834
70 % 12 13 4589
50 % 12 13 4409
40 % 12 13 4159
30 % 12 13 3766
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6363
95 % 8 9 6514 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 4833
70 % 12 13 4573
50 % 12 13 4394
40 % 12 13 4158
30 % 12 13 3765
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6403
95 % 8 9 6558 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6550
70 % 10 11 5303
50 % 11 12 4713
40 % 11 12 4438
30 % 11 12 4006
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6364
95 % 8 9 6515 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 8 9 6506
70 % 11 12 4710
50 % 11 12 4516
40 % 11 12 4253
30 % 11 12 3844
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6365
95 % 8 9 6516 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 8 9 6507
70 % 8 9 6307
50 % 8 9 5890
40 % 8 9 5479
30 % 8 9 4813
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6366
95 % 8 9 6517 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6508
70 % 11 12 4708
50 % 11 12 4514
40 % 11 12 4251
30 % 11 12 3842
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6367
95 % 8 9 6518 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.4
PDBFlex
90 % 8 9 6509
70 % 11 12 4709
50 % 11 12 4515
40 % 11 12 4252
30 % 11 12 3843
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 6361
95 % 8 9 6513 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6505
70 % 11 12 4707
50 % 12 13 4261
40 % 12 13 4028
30 % 12 13 3660

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures