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Crystal Structure of Cytochrome b6f Complex from M.laminosus
Sequence Clustering and Redundancy Reduction Results
1VF5
Sequence Clusters for the Sequence Entities in PDB 1VF5
Entity #1: Chains: A,N - CYTOCHROME B6 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4408
95% 11 12 3693
90% 11 12 3720
70% 12 13 3454
50% 12 13 3381
40% 12 13 3242
30% 12 13 2999
Entity #2: Chains: B,O - SUBUNIT IV protein, length: 160 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17671
95% 8 9 5076
90% 11 12 3773
70% 12 13 3477
50% 12 13 3404
40% 12 13 3267
30% 12 13 3023
Entity #3: Chains: C,P - CYTOCHROME F protein, length: 289 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4365
95% 8 9 4984
90% 8 9 4988
70% 10 11 3942
50% 11 12 3551
40% 11 12 3405
30% 11 12 3155
Entity #4: Chains: D,Q - RIESKE IRON-SULFUR PROTEIN protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17334
95% 8 9 5061
90% 8 9 5069
70% 11 12 3734
50% 11 12 3627
40% 11 12 3467
30% 11 12 3202
Entity #5: Chains: E,R - PROTEIN PET L protein, length: 32 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4511
95% 8 9 5154
90% 8 9 5159
70% 8 9 5060
50% 8 9 4786
40% 8 9 4483
30% 8 9 4069
Entity #6: Chains: F,S - PROTEIN PET M protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4509
95% 8 9 5152
90% 8 9 5157
70% 11 12 3840
50% 11 12 3720
40% 11 12 3553
30% 11 12 3280
Entity #7: Chains: G,T - PROTEIN PET G protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4507
95% 8 9 5149
90% 8 9 5155
70% 11 12 3839
50% 11 12 3719
40% 11 12 3552
30% 11 12 3279
Entity #8: Chains: H,U - PROTEIN PET N protein, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4512
95% 8 9 5156
90% 8 9 5161
70% 11 12 3844
50% 11 12 3724
40% 11 12 3557
30% 11 12 3284
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.