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Crystal Structure of Cytochrome b6f Complex from M.laminosus
Sequence Clustering and Redundancy Reduction Results
1VF5
Sequence Clusters for the Sequence Entities in PDB 1VF5
Entity #1: Chains: A,N - CYTOCHROME B6 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4010
95% 11 12 3369
90% 11 12 3406
70% 12 13 3165
50% 12 13 3157
40% 12 13 3051
30% 12 13 2821
Entity #2: Chains: B,O - SUBUNIT IV protein, length: 160 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16453
95% 8 9 4645
90% 11 12 3451
70% 12 13 3189
50% 12 13 3179
40% 12 13 3075
30% 12 13 2842
Entity #3: Chains: C,P - CYTOCHROME F protein, length: 289 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 3968
95% 8 9 4555
90% 8 9 4579
70% 10 11 3612
50% 11 12 3311
40% 11 12 3196
30% 11 12 2960
Entity #4: Chains: D,Q - RIESKE IRON-SULFUR PROTEIN protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16133
95% 8 9 4629
90% 8 9 4658
70% 11 12 3426
50% 11 12 3383
40% 11 12 3247
30% 11 12 3005
Entity #5: Chains: E,R - PROTEIN PET L protein, length: 32 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4121
95% 8 9 4730
90% 8 9 4753
70% 8 9 4684
50% 8 9 4479
40% 8 9 4202
30% 8 9 3828
Entity #6: Chains: F,S - PROTEIN PET M protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4119
95% 8 9 4728
90% 8 9 4751
70% 11 12 3520
50% 11 12 3466
40% 11 12 3324
30% 11 12 3079
Entity #7: Chains: G,T - PROTEIN PET G protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4117
95% 8 9 4725
90% 8 9 4749
70% 11 12 3519
50% 11 12 3465
40% 11 12 3323
30% 11 12 3078
Entity #8: Chains: H,U - PROTEIN PET N protein, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4123
95% 8 9 4733
90% 8 9 4756
70% 11 12 3523
50% 11 12 3468
40% 11 12 3326
30% 11 12 3081
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.