Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5053
95 % 11 12 4243
90 % 11 12 4265
70 % 12 13 3909
50 % 12 13 3803
40 % 12 13 3638
30 % 12 13 3363
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 20094
95 % 8 9 5732
90 % 11 12 4318
70 % 12 13 3934
50 % 12 13 3824
40 % 12 13 3662
30 % 12 13 3384
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5001
95 % 8 9 5625
90 % 8 9 5622
70 % 10 11 4455
50 % 11 12 4007
40 % 11 12 3833
30 % 11 12 3541
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19717
95 % 8 9 5717
90 % 8 9 5713
70 % 11 12 4224
50 % 11 12 4095
40 % 11 12 3909
30 % 11 12 3600
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5184
95 % 8 9 5809
90 % 8 9 5801
70 % 8 9 5678
50 % 8 9 5330
40 % 8 9 5011
30 % 8 9 4522
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5182
95 % 8 9 5807
90 % 8 9 5799
70 % 11 12 4344
50 % 11 12 4196
40 % 11 12 4004
30 % 11 12 3691
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5180
95 % 8 9 5805
90 % 8 9 5797
70 % 11 12 4343
50 % 11 12 4195
40 % 11 12 4003
30 % 11 12 3690
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5185
95 % 8 9 5811
90 % 8 9 5803
70 % 11 12 4348
50 % 11 12 4200
40 % 11 12 4008
30 % 11 12 3695

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.