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Crystal Structure of Cytochrome b6f Complex from M.laminosus
Sequence Clustering and Redundancy Reduction Results
1VF5
Sequence Clusters for the Sequence Entities in PDB 1VF5
Entity #1: Chains: A,N - CYTOCHROME B6 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4524
95% 11 12 3820
90% 11 12 3851
70% 12 13 3555
50% 12 13 3448
40% 12 13 3305
30% 12 13 3066
Entity #2: Chains: B,O - SUBUNIT IV protein, length: 160 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18109
95% 8 9 5187
90% 11 12 3901
70% 12 13 3577
50% 12 13 3471
40% 12 13 3330
30% 12 13 3090
Entity #3: Chains: C,P - CYTOCHROME F protein, length: 289 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4482
95% 8 9 5094
90% 8 9 5101
70% 10 11 4050
50% 11 12 3621
40% 11 12 3470
30% 11 12 3224
Entity #4: Chains: D,Q - RIESKE IRON-SULFUR PROTEIN protein, length: 179 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17764
95% 8 9 5174
90% 8 9 5181
70% 11 12 3836
50% 11 12 3702
40% 11 12 3537
30% 11 12 3275
Entity #5: Chains: E,R - PROTEIN PET L protein, length: 32 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4634
95% 8 9 5269
90% 8 9 5272
70% 8 9 5173
50% 8 9 4887
40% 8 9 4571
30% 8 9 4149
Entity #6: Chains: F,S - PROTEIN PET M protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4632
95% 8 9 5267
90% 8 9 5270
70% 11 12 3944
50% 11 12 3798
40% 11 12 3625
30% 11 12 3356
Entity #7: Chains: G,T - PROTEIN PET G protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4630
95% 8 9 5264
90% 8 9 5268
70% 11 12 3943
50% 11 12 3796
40% 11 12 3623
30% 11 12 3354
Entity #8: Chains: H,U - PROTEIN PET N protein, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 9 4635
95% 8 9 5271
90% 8 9 5274
70% 11 12 3948
50% 11 12 3802
40% 11 12 3629
30% 11 12 3360
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.