Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 5739
95 % 11 12 4792 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 11 12 4809
70 % 12 13 4391
50 % 12 13 4221
40 % 12 13 4030
30 % 12 13 3719
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22421
95 % 8 9 6450 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 12 4876
70 % 12 13 4419
50 % 12 13 4247
40 % 12 13 4055
30 % 12 13 3741
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 5679
95 % 8 9 6341 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 8 9 6326
70 % 10 11 5006
50 % 11 12 4452
40 % 11 12 4238
30 % 11 12 3902
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22016
95 % 8 9 6436 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 8 9 6419
70 % 11 12 4735
50 % 11 12 4543
40 % 11 12 4317
30 % 11 12 3966
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 5903
95 % 8 9 6547 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 8 9 6526
70 % 8 9 6372
50 % 8 9 5942
40 % 8 9 5564
30 % 8 9 5004
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 5901
95 % 8 9 6546 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 8 9 6525
70 % 11 12 4866
50 % 11 12 4659
40 % 11 12 4424
30 % 11 12 4062
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 5899
95 % 8 9 6544 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.4
PDBFlex
90 % 8 9 6523
70 % 11 12 4864
50 % 11 12 4658
40 % 11 12 4423
30 % 11 12 4061
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 5904
95 % 8 9 6549 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6528
70 % 11 12 4871
50 % 11 12 4663
40 % 11 12 4428
30 % 11 12 4066

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.