Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5634
95 % 11 12 4693
90 % 11 12 4708
70 % 12 13 4321
50 % 12 13 4161
40 % 12 13 3971
30 % 12 13 3659
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 22108
95 % 8 9 6350
90 % 11 12 4774
70 % 12 13 4347
50 % 12 13 4187
40 % 12 13 3996
30 % 12 13 3681
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5572
95 % 8 9 6240
90 % 8 9 6219
70 % 10 11 4927
50 % 11 12 4390
40 % 11 12 4175
30 % 11 12 3848
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21703
95 % 8 9 6336
90 % 8 9 6316
70 % 11 12 4661
50 % 11 12 4483
40 % 11 12 4257
30 % 11 12 3914
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5801
95 % 8 9 6445
90 % 8 9 6424
70 % 8 9 6274
50 % 8 9 5857
40 % 8 9 5480
30 % 8 9 4929
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5799
95 % 8 9 6444
90 % 8 9 6423
70 % 11 12 4789
50 % 11 12 4598
40 % 11 12 4365
30 % 11 12 4011
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5797
95 % 8 9 6442
90 % 8 9 6420
70 % 11 12 4787
50 % 11 12 4597
40 % 11 12 4364
30 % 11 12 4010
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5802
95 % 8 9 6447
90 % 8 9 6426
70 % 11 12 4794
50 % 11 12 4602
40 % 11 12 4369
30 % 11 12 4015

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.