Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4947
95 % 11 12 4174
90 % 11 12 4194
70 % 12 13 3843
50 % 12 13 3741
40 % 12 13 3578
30 % 12 13 3311
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19744
95 % 8 9 5633
90 % 11 12 4245
70 % 12 13 3868
50 % 12 13 3763
40 % 12 13 3603
30 % 12 13 3333
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4896
95 % 8 9 5527
90 % 8 9 5527
70 % 10 11 4383
50 % 11 12 3941
40 % 11 12 3769
30 % 11 12 3491
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19372
95 % 8 9 5618
90 % 8 9 5615
70 % 11 12 4155
50 % 11 12 4027
40 % 11 12 3840
30 % 11 12 3547
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5076
95 % 8 9 5711
90 % 8 9 5705
70 % 8 9 5590
50 % 8 9 5257
40 % 8 9 4934
30 % 8 9 4466
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5074
95 % 8 9 5709
90 % 8 9 5703
70 % 11 12 4269
50 % 11 12 4125
40 % 11 12 3932
30 % 11 12 3633
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5072
95 % 8 9 5707
90 % 8 9 5701
70 % 11 12 4268
50 % 11 12 4124
40 % 11 12 3931
30 % 11 12 3632
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5077
95 % 8 9 5713
90 % 8 9 5707
70 % 11 12 4273
50 % 11 12 4129
40 % 11 12 3936
30 % 11 12 3637

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.