Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4988
95 % 11 12 4197
90 % 11 12 4213
70 % 12 13 3862
50 % 12 13 3764
40 % 12 13 3598
30 % 12 13 3327
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19880
95 % 8 9 5666
90 % 11 12 4266
70 % 12 13 3887
50 % 12 13 3786
40 % 12 13 3623
30 % 12 13 3349
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 4938
95 % 8 9 5560
90 % 8 9 5558
70 % 10 11 4406
50 % 11 12 3962
40 % 11 12 3788
30 % 11 12 3505
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19506
95 % 8 9 5651
90 % 8 9 5647
70 % 11 12 4174
50 % 11 12 4049
40 % 11 12 3860
30 % 11 12 3561
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5118
95 % 8 9 5744
90 % 8 9 5737
70 % 8 9 5620
50 % 8 9 5283
40 % 8 9 4965
30 % 8 9 4488
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5116
95 % 8 9 5742
90 % 8 9 5735
70 % 11 12 4291
50 % 11 12 4148
40 % 11 12 3954
30 % 11 12 3650
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5114
95 % 8 9 5740
90 % 8 9 5733
70 % 11 12 4290
50 % 11 12 4147
40 % 11 12 3953
30 % 11 12 3649
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5119
95 % 8 9 5746
90 % 8 9 5739
70 % 11 12 4295
50 % 11 12 4152
40 % 11 12 3958
30 % 11 12 3654

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.