Sequence Similarity Clusters for the Entities in PDB 1VF5

Entity #1 | Chains: A,N
CYTOCHROME B6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5429
95 % 11 12 4526
90 % 11 12 4537
70 % 12 13 4159
50 % 12 13 4025
40 % 12 13 3853
30 % 12 13 3551
Entity #2 | Chains: B,O
SUBUNIT IV protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21358
95 % 8 9 6120
90 % 11 12 4598
70 % 12 13 4187
50 % 12 13 4049
40 % 12 13 3878
30 % 12 13 3573
Entity #3 | Chains: C,P
CYTOCHROME F protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5370
95 % 8 9 6012
90 % 8 9 5997
70 % 10 11 4728
50 % 11 12 4236
40 % 11 12 4045
30 % 11 12 3727
Entity #4 | Chains: D,Q
RIESKE IRON-SULFUR PROTEIN protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 20969
95 % 8 9 6107
90 % 8 9 6090
70 % 11 12 4479
50 % 11 12 4326
40 % 11 12 4126
30 % 11 12 3790
Entity #5 | Chains: E,R
PROTEIN PET L protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5582
95 % 8 9 6211
90 % 8 9 6192
70 % 8 9 6049
50 % 8 9 5662
40 % 8 9 5297
30 % 8 9 4768
Entity #6 | Chains: F,S
PROTEIN PET M protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5581
95 % 8 9 6210
90 % 8 9 6191
70 % 11 12 4596
50 % 11 12 4433
40 % 11 12 4226
30 % 11 12 3878
Entity #7 | Chains: G,T
PROTEIN PET G protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5579
95 % 8 9 6208
90 % 8 9 6189
70 % 11 12 4594
50 % 11 12 4432
40 % 11 12 4225
30 % 11 12 3877
Entity #8 | Chains: H,U
PROTEIN PET N protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 5583
95 % 8 9 6213
90 % 8 9 6194
70 % 11 12 4600
50 % 11 12 4438
40 % 11 12 4231
30 % 11 12 3883

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.