Sequence Similarity Clusters for the Entities in PDB 1VCB

Entity #1 | Chains: A,D,G,J
PROTEIN (ELONGIN B) protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 18 969
95 % 13 20 1238 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 13 20 1263
70 % 13 20 1294
50 % 13 20 1353
40 % 13 20 1361
30 % 13 20 1337
Entity #2 | Chains: B,E,H,K
PROTEIN (ELONGIN C) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24621
95 % 1 1 21002 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 1 20404
70 % 1 1 18731
50 % 1 1 16240
40 % 1 1 14454
30 % 1 1 12355
Entity #3 | Chains: C,F,I,L
PROTEIN (VHL) protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 38 206
95 % 34 38 285 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 34 38 298
70 % 34 38 345
50 % 34 38 414
40 % 34 38 433
30 % 34 38 434

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures