Sequence Similarity Clusters for the Entities in PDB 1VCB

Entity #1 | Chains: A,D,G,J
PROTEIN (ELONGIN B) protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 18 954
95 % 13 20 1216 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 13 20 1243
70 % 13 20 1275
50 % 13 20 1334
40 % 13 20 1344
30 % 13 20 1321
Entity #2 | Chains: B,E,H,K
PROTEIN (ELONGIN C) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24208
95 % 1 1 20675 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 1 20094
70 % 1 1 18460
50 % 1 1 16020
40 % 1 1 14261
30 % 1 1 12194
Entity #3 | Chains: C,F,I,L
PROTEIN (VHL) protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 35 221
95 % 31 35 310 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 31 35 324
70 % 31 35 373
50 % 31 35 434
40 % 31 35 454
30 % 31 35 451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures