Sequence Similarity Clusters for the Entities in PDB 1UA6

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 3542
95 % 13 22 2190 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 13 22 2258
70 % 72 183 75
50 % 109 297 22
40 % 302 874 5
30 % 343 1000 7
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44745
95 % 13 22 2188 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 13 22 2256
70 % 14 39 1059
50 % 181 532 8
40 % 303 874 5
30 % 344 1000 7
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 497 641 3
95 % 547 694 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 556 711 5
70 % 753 928 7
50 % 757 936 7
40 % 775 970 11
30 % 775 970 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.