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An Information Portal to 108263 Biological Macromolecular Structures

RNA polymerase II complexed with 2'dATP
Sequence Clustering and Redundancy Reduction Results
1TWH
Sequence Clusters for the Sequence Entities in PDB 1TWH
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 101 204
95% 54 101 289
90% 54 101 304
70% 54 101 321
50% 54 102 349
40% 54 102 374
30% 54 102 380
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 106 189
95% 58 106 265
90% 58 106 279
70% 58 106 298
50% 58 106 328
40% 58 106 355
30% 58 106 363
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 102 201
95% 54 103 280
90% 54 103 294
70% 54 103 314
50% 54 104 340
40% 55 112 316
30% 55 112 326
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 101 205
95% 54 101 291
90% 54 101 306
70% 54 101 323
50% 54 102 351
40% 54 102 377
30% 54 102 384
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 108 184
95% 59 108 257
90% 59 108 270
70% 59 108 289
50% 59 109 307
40% 59 109 334
30% 59 109 346
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 105 193
95% 58 105 274
90% 58 105 286
70% 58 105 305
50% 58 107 319
40% 58 107 349
30% 58 107 354
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 107 186
95% 58 108 258
90% 58 108 271
70% 58 108 290
50% 58 108 320
40% 58 108 350
30% 58 110 345
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 102 203
95% 54 102 288
90% 54 102 303
70% 54 102 320
50% 54 103 347
40% 54 103 372
30% 54 103 378
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 107 187
95% 58 107 263
90% 58 107 275
70% 58 108 287
50% 59 116 274
40% 59 116 304
30% 59 116 319
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 103 200
95% 54 103 283
90% 54 103 298
70% 54 103 317
50% 54 103 353
40% 54 104 368
30% 54 104 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.