Sequence Similarity Clusters for the Entities in PDB 1TWH

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 113 206
95 % 59 113 291
90 % 59 113 305
70 % 59 113 329
50 % 59 123 328
40 % 59 123 355
30 % 59 123 363
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 120 183
95 % 61 120 253
90 % 61 120 261
70 % 61 120 298
50 % 61 120 327
40 % 61 120 353
30 % 61 120 360
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 114 204
95 % 59 115 286
90 % 59 115 298
70 % 59 115 322
50 % 59 125 323
40 % 60 133 309
30 % 60 136 313
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 110 209
95 % 57 110 301
90 % 57 110 316
70 % 57 110 337
50 % 57 111 364
40 % 57 111 397
30 % 57 111 398
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 125 171
95 % 64 125 236
90 % 64 125 246
70 % 64 125 277
50 % 64 126 309
40 % 64 135 303
30 % 64 135 321
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 119 188
95 % 61 119 254
90 % 61 119 262
70 % 61 119 299
50 % 61 130 295
40 % 61 130 318
30 % 61 130 332
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 124 175
95 % 63 125 237
90 % 63 125 247
70 % 63 125 279
50 % 63 125 317
40 % 63 125 338
30 % 63 136 316
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 114 205
95 % 59 114 290
90 % 59 114 304
70 % 59 114 328
50 % 59 115 351
40 % 59 115 384
30 % 59 118 378
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 124 176
95 % 63 124 242
90 % 63 124 251
70 % 63 134 256
50 % 64 142 252
40 % 64 142 273
30 % 64 142 290
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 115 203
95 % 59 115 289
90 % 59 115 302
70 % 59 115 326
50 % 59 115 357
40 % 59 116 380
30 % 59 116 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.