Sequence Similarity Clusters for the Entities in PDB 1TWH

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 113 206
95 % 59 113 288
90 % 59 113 302
70 % 59 113 326
50 % 59 123 327
40 % 59 123 353
30 % 59 123 362
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 120 181
95 % 61 120 251
90 % 61 120 260
70 % 61 120 296
50 % 61 120 325
40 % 61 120 351
30 % 61 120 359
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 114 204
95 % 59 115 281
90 % 59 115 295
70 % 59 115 319
50 % 59 125 321
40 % 60 133 307
30 % 60 136 310
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 110 209
95 % 57 110 299
90 % 57 110 314
70 % 57 110 334
50 % 57 111 360
40 % 57 111 393
30 % 57 111 395
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 125 171
95 % 64 125 235
90 % 64 125 246
70 % 64 125 277
50 % 64 126 308
40 % 64 135 301
30 % 64 135 317
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 119 186
95 % 61 119 252
90 % 61 119 261
70 % 61 119 298
50 % 61 130 294
40 % 61 130 318
30 % 61 130 332
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 124 175
95 % 63 125 236
90 % 63 125 247
70 % 63 125 279
50 % 63 125 316
40 % 63 125 336
30 % 63 136 313
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 114 205
95 % 59 114 287
90 % 59 114 301
70 % 59 114 325
50 % 59 115 347
40 % 59 115 380
30 % 59 118 378
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 124 176
95 % 63 124 241
90 % 63 124 251
70 % 63 134 254
50 % 64 142 252
40 % 64 142 273
30 % 64 142 289
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 115 203
95 % 59 115 285
90 % 59 115 299
70 % 59 115 323
50 % 59 115 354
40 % 59 116 376
30 % 59 116 382

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.