Sequence Similarity Clusters for the Entities in PDB 1TWH

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 113 206
95 % 59 113 288
90 % 59 113 302
70 % 59 113 325
50 % 59 123 325
40 % 59 123 350
30 % 59 123 360
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 120 181
95 % 61 120 251
90 % 61 120 260
70 % 61 120 295
50 % 61 120 323
40 % 61 120 348
30 % 61 120 357
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 114 204
95 % 59 115 281
90 % 59 115 295
70 % 59 115 319
50 % 59 125 319
40 % 60 133 303
30 % 60 136 306
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 110 209
95 % 57 110 297
90 % 57 110 312
70 % 57 110 332
50 % 57 111 355
40 % 57 111 387
30 % 57 111 392
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 125 169
95 % 64 125 234
90 % 64 125 246
70 % 64 125 277
50 % 64 126 306
40 % 64 135 299
30 % 64 135 313
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 119 185
95 % 61 119 252
90 % 61 119 261
70 % 61 119 298
50 % 61 130 292
40 % 61 130 315
30 % 61 130 330
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 124 174
95 % 63 125 235
90 % 63 125 247
70 % 63 125 279
50 % 63 125 315
40 % 63 125 334
30 % 63 136 309
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 114 205
95 % 59 114 287
90 % 59 114 301
70 % 59 114 324
50 % 59 115 345
40 % 59 115 373
30 % 59 118 376
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 124 175
95 % 63 124 241
90 % 63 124 251
70 % 63 134 245
50 % 64 142 249
40 % 64 142 272
30 % 64 142 287
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 115 203
95 % 59 115 285
90 % 59 115 299
70 % 59 115 323
50 % 59 115 350
40 % 59 116 369
30 % 59 116 379

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.