Sequence Similarity Clusters for the Entities in PDB 1TWH

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 114 212
95 % 59 114 301
90 % 59 114 316
70 % 59 114 356
50 % 59 124 368
40 % 59 124 398
30 % 59 124 399
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 127 180
95 % 61 127 248
90 % 61 127 256
70 % 61 127 290
50 % 61 127 326
40 % 61 127 356
30 % 61 127 361
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 115 209
95 % 59 116 290
90 % 59 116 303
70 % 59 116 344
50 % 59 126 358
40 % 60 134 325
30 % 60 137 329
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 111 214
95 % 57 111 308
90 % 57 111 324
70 % 57 111 365
50 % 57 112 418
40 % 57 112 457
30 % 57 112 449
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 132 170
95 % 64 132 233
90 % 64 132 244
70 % 64 132 279
50 % 64 133 305
40 % 64 142 305
30 % 64 142 316
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 126 181
95 % 61 126 250
90 % 61 126 258
70 % 61 126 293
50 % 61 137 300
40 % 61 137 319
30 % 61 137 332
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 131 172
95 % 63 132 236
90 % 63 132 247
70 % 63 132 280
50 % 63 132 314
40 % 63 132 335
30 % 63 143 314
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 115 210
95 % 59 115 300
90 % 59 115 314
70 % 59 115 354
50 % 59 116 403
40 % 59 116 438
30 % 59 119 425
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 131 173
95 % 63 131 238
90 % 63 131 248
70 % 63 141 264
50 % 64 149 259
40 % 64 149 282
30 % 64 149 290
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 116 208
95 % 59 116 296
90 % 59 116 310
70 % 59 116 349
50 % 59 116 406
40 % 59 117 429
30 % 59 117 430

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.