POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

RNA polymerase II complexed with 2'dATP
Sequence Clustering and Redundancy Reduction Results
1TWH
Sequence Clusters for the Sequence Entities in PDB 1TWH
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 96 206
95% 54 96 290
90% 54 96 307
70% 54 96 324
50% 54 97 348
40% 54 97 372
30% 54 97 385
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 101 191
95% 58 101 271
90% 58 101 283
70% 58 101 301
50% 58 101 338
40% 58 101 360
30% 58 101 373
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 97 204
95% 54 98 282
90% 54 98 298
70% 54 98 315
50% 54 99 341
40% 55 108 311
30% 55 108 328
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 96 208
95% 54 96 291
90% 54 96 308
70% 54 96 325
50% 54 97 351
40% 54 97 374
30% 54 97 387
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 103 183
95% 59 103 260
90% 59 103 272
70% 59 103 294
50% 59 104 316
40% 59 104 342
30% 59 104 352
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 100 193
95% 58 100 275
90% 58 100 287
70% 58 100 307
50% 58 102 329
40% 58 102 352
30% 58 102 363
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 102 186
95% 58 103 261
90% 58 103 274
70% 58 103 295
50% 58 103 330
40% 58 103 353
30% 58 105 346
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 97 205
95% 54 97 289
90% 54 97 306
70% 54 97 322
50% 54 98 346
40% 54 98 370
30% 54 98 383
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 102 189
95% 58 102 266
90% 58 102 278
70% 58 103 290
50% 59 112 274
40% 59 112 303
30% 59 112 318
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 98 203
95% 54 98 286
90% 54 98 303
70% 54 98 318
50% 54 98 358
40% 54 99 367
30% 54 99 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.