Sequence Similarity Clusters for the Entities in PDB 1TWG

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 114 206
95 % 68 114 291
90 % 68 114 304
70 % 68 114 329
50 % 68 124 328
40 % 68 124 354
30 % 68 124 361
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 121 181
95 % 70 121 251
90 % 70 121 259
70 % 70 121 297
50 % 70 121 324
40 % 70 121 348
30 % 70 121 354
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 115 203
95 % 68 116 284
90 % 68 116 295
70 % 68 116 321
50 % 68 126 322
40 % 69 134 310
30 % 69 137 311
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 111 209
95 % 66 111 299
90 % 66 111 314
70 % 66 111 335
50 % 66 112 360
40 % 66 112 396
30 % 66 112 396
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 126 169
95 % 73 126 234
90 % 73 126 244
70 % 73 126 274
50 % 73 127 307
40 % 73 136 303
30 % 73 136 319
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 120 184
95 % 70 120 254
90 % 70 120 262
70 % 70 120 299
50 % 70 131 293
40 % 70 131 316
30 % 70 131 332
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 125 173
95 % 72 126 235
90 % 72 126 245
70 % 72 126 277
50 % 72 126 314
40 % 72 126 336
30 % 72 137 314
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 115 205
95 % 68 115 290
90 % 68 115 303
70 % 68 115 328
50 % 68 116 350
40 % 68 116 382
30 % 68 119 378
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 125 174
95 % 72 125 238
90 % 72 125 248
70 % 72 135 258
50 % 73 143 253
40 % 73 143 272
30 % 73 143 288
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 116 202
95 % 68 116 287
90 % 68 116 299
70 % 68 116 324
50 % 68 116 353
40 % 68 117 378
30 % 68 117 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.