Sequence Similarity Clusters for the Entities in PDB 1TWG

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 115 226
95 % 69 115 317
90 % 69 115 334
70 % 69 118 355
50 % 69 129 363
40 % 69 129 392
30 % 69 129 399
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 133 184
95 % 71 133 250
90 % 71 133 263
70 % 71 133 296
50 % 71 136 321
40 % 71 136 340
30 % 71 136 350
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 116 223
95 % 69 117 308
90 % 69 117 324
70 % 69 122 337
50 % 69 131 354
40 % 70 139 324
30 % 70 142 330
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 112 230
95 % 67 112 322
90 % 67 112 341
70 % 67 112 377
50 % 67 114 436
40 % 67 114 464
30 % 67 114 464
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 138 177
95 % 74 138 239
90 % 74 138 253
70 % 74 141 276
50 % 74 143 301
40 % 74 152 297
30 % 74 152 310
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 132 186
95 % 71 132 253
90 % 71 132 266
70 % 71 132 297
50 % 71 147 291
40 % 71 147 304
30 % 71 147 322
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 137 180
95 % 73 138 240
90 % 73 138 254
70 % 73 138 285
50 % 73 141 308
40 % 73 141 321
30 % 73 153 307
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 116 225
95 % 69 116 316
90 % 69 116 333
70 % 69 119 353
50 % 69 121 403
40 % 69 121 429
30 % 69 124 425
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 137 181
95 % 73 137 244
90 % 73 137 257
70 % 73 151 262
50 % 74 159 260
40 % 74 159 274
30 % 74 159 281
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 117 221
95 % 69 117 310
90 % 69 117 327
70 % 69 117 365
50 % 69 120 412
40 % 69 122 427
30 % 69 122 430

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.