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An Information Portal to 105339 Biological Macromolecular Structures

RNA polymerase II complexed with CTP
Sequence Clustering and Redundancy Reduction Results
1TWG
Sequence Clusters for the Sequence Entities in PDB 1TWG
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 96 208
95% 60 96 292
90% 60 96 309
70% 60 96 326
50% 60 97 353
40% 60 97 377
30% 60 97 388
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 101 192
95% 64 101 274
90% 64 101 287
70% 64 101 304
50% 64 101 341
40% 64 101 367
30% 64 101 377
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 97 206
95% 60 98 286
90% 60 98 302
70% 60 98 319
50% 60 99 346
40% 61 107 317
30% 61 107 330
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 96 210
95% 60 96 294
90% 60 96 311
70% 60 96 327
50% 60 97 356
40% 60 97 380
30% 60 97 390
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 103 186
95% 65 103 263
90% 65 103 275
70% 65 103 298
50% 65 104 323
40% 65 104 347
30% 65 104 356
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 100 194
95% 64 100 279
90% 64 100 292
70% 64 100 311
50% 64 102 332
40% 64 102 357
30% 64 102 370
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 102 189
95% 64 103 265
90% 64 103 277
70% 64 103 299
50% 64 103 333
40% 64 103 358
30% 64 105 352
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 97 207
95% 60 97 291
90% 60 97 308
70% 60 97 324
50% 60 98 351
40% 60 98 375
30% 60 98 386
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 102 190
95% 64 102 269
90% 64 102 282
70% 64 103 295
50% 65 111 277
40% 65 111 306
30% 65 111 319
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 98 205
95% 60 98 289
90% 60 98 306
70% 60 98 321
50% 60 98 362
40% 60 99 372
30% 60 99 381
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.