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An Information Portal to 108124 Biological Macromolecular Structures

RNA polymerase II complexed with CTP
Sequence Clustering and Redundancy Reduction Results
1TWG
Sequence Clusters for the Sequence Entities in PDB 1TWG
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 101 204
95% 60 101 289
90% 60 101 303
70% 60 101 320
50% 60 102 349
40% 60 102 374
30% 60 102 381
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 106 189
95% 64 106 265
90% 64 106 279
70% 64 106 298
50% 64 106 328
40% 64 106 355
30% 64 106 364
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 102 201
95% 60 103 280
90% 60 103 293
70% 60 103 314
50% 60 104 340
40% 61 112 316
30% 61 112 327
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 101 205
95% 60 101 291
90% 60 101 305
70% 60 101 322
50% 60 102 351
40% 60 102 377
30% 60 102 385
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 108 184
95% 65 108 257
90% 65 108 270
70% 65 108 289
50% 65 109 307
40% 65 109 334
30% 65 109 347
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 105 193
95% 64 105 274
90% 64 105 286
70% 64 105 305
50% 64 107 319
40% 64 107 349
30% 64 107 355
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 107 186
95% 64 108 258
90% 64 108 271
70% 64 108 290
50% 64 108 320
40% 64 108 350
30% 64 110 346
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 102 203
95% 60 102 288
90% 60 102 302
70% 60 102 319
50% 60 103 347
40% 60 103 372
30% 60 103 379
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 107 187
95% 64 107 263
90% 64 107 275
70% 64 108 286
50% 65 116 274
40% 65 116 303
30% 65 116 320
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 103 200
95% 60 103 283
90% 60 103 297
70% 60 103 316
50% 60 103 353
40% 60 104 368
30% 60 104 375
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.