POP-OUT | CLOSE

An Information Portal to 110071 Biological Macromolecular Structures

RNA polymerase II complexed with CTP
Sequence Clustering and Redundancy Reduction Results
1TWG
Sequence Clusters for the Sequence Entities in PDB 1TWG
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 101 208
95% 60 101 292
90% 60 101 310
70% 60 101 329
50% 60 102 352
40% 60 102 381
30% 60 102 387
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 106 192
95% 64 106 271
90% 64 106 285
70% 64 106 303
50% 64 106 332
40% 64 106 365
30% 64 106 371
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 102 205
95% 60 103 284
90% 60 103 298
70% 60 103 318
50% 60 104 345
40% 61 112 324
30% 61 112 332
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 101 209
95% 60 101 293
90% 60 101 311
70% 60 101 330
50% 60 102 354
40% 60 102 384
30% 60 102 390
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 108 187
95% 65 108 262
90% 65 108 276
70% 65 108 296
50% 65 109 314
40% 65 109 344
30% 65 109 353
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 105 196
95% 64 105 279
90% 64 105 291
70% 64 105 310
50% 64 107 324
40% 64 107 357
30% 64 107 360
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 107 188
95% 64 108 263
90% 64 108 277
70% 64 108 297
50% 64 108 325
40% 64 108 358
30% 64 110 350
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 102 207
95% 60 102 291
90% 60 102 309
70% 60 102 327
50% 60 103 350
40% 60 103 379
30% 60 103 385
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 107 189
95% 64 107 269
90% 64 107 282
70% 64 108 293
50% 65 116 277
40% 65 116 310
30% 65 116 322
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 103 202
95% 60 103 287
90% 60 103 303
70% 60 103 321
50% 60 103 356
40% 60 104 376
30% 60 104 382
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.