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An Information Portal to 106082 Biological Macromolecular Structures

RNA polymerase II complexed with UTP at 2.3 A resolution
Sequence Clustering and Redundancy Reduction Results
1TWF
Sequence Clusters for the Sequence Entities in PDB 1TWF
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 96 209
95% 1 96 295
90% 1 96 313
70% 1 96 329
50% 1 97 358
40% 1 97 379
30% 1 97 389
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 101 193
95% 2 101 275
90% 2 101 289
70% 2 101 306
50% 2 101 344
40% 2 101 367
30% 2 101 378
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 97 206
95% 1 98 287
90% 1 98 305
70% 1 98 321
50% 1 99 349
40% 1 107 316
30% 1 107 330
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 96 211
95% 1 96 297
90% 1 96 315
70% 1 96 330
50% 1 97 361
40% 1 97 382
30% 1 97 392
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 103 186
95% 3 103 263
90% 3 103 276
70% 3 103 298
50% 3 104 325
40% 3 104 348
30% 3 104 356
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 100 195
95% 2 100 280
90% 2 100 294
70% 2 100 313
50% 2 102 335
40% 2 102 360
30% 2 102 370
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 102 189
95% 2 103 265
90% 2 103 278
70% 2 103 299
50% 2 103 336
40% 2 103 361
30% 2 105 351
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 97 207
95% 1 97 293
90% 1 97 311
70% 1 97 326
50% 1 98 357
40% 1 98 378
30% 1 98 388
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 102 191
95% 2 102 269
90% 2 102 284
70% 2 103 295
50% 2 111 278
40% 2 111 306
30% 2 111 322
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 98 205
95% 1 98 290
90% 1 98 308
70% 1 98 323
50% 1 98 364
40% 1 99 373
30% 1 99 383
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.