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RNA polymerase II complexed with UTP at 2.3 A resolution
Sequence Clustering and Redundancy Reduction Results
1TWF
Sequence Clusters for the Sequence Entities in PDB 1TWF
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 108 198
95% 1 108 273
90% 1 108 287
70% 1 108 308
50% 1 109 329
40% 1 109 359
30% 1 109 365
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 113 187
95% 2 113 253
90% 2 113 264
70% 2 113 290
50% 2 113 317
40% 2 113 349
30% 2 113 356
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 109 195
95% 1 110 265
90% 1 110 278
70% 1 110 301
50% 1 111 320
40% 1 119 308
30% 1 119 319
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 108 200
95% 1 108 277
90% 1 108 291
70% 1 108 310
50% 1 109 330
40% 1 109 363
30% 1 109 367
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 115 170
95% 3 115 239
90% 3 115 249
70% 3 115 277
50% 3 116 305
40% 3 116 335
30% 3 116 342
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 112 188
95% 2 112 255
90% 2 112 267
70% 2 112 293
50% 2 114 312
40% 2 114 340
30% 2 114 350
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 114 179
95% 2 115 241
90% 2 115 251
70% 2 115 280
50% 2 115 313
40% 2 115 341
30% 2 117 336
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 109 196
95% 1 109 272
90% 1 109 286
70% 1 109 307
50% 1 110 328
40% 1 110 358
30% 1 110 364
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 114 183
95% 2 114 251
90% 2 114 261
70% 2 115 272
50% 2 123 270
40% 2 123 296
30% 2 123 311
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 110 194
95% 1 110 270
90% 1 110 283
70% 1 110 304
50% 1 110 333
40% 1 111 353
30% 1 111 362
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.