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RNA polymerase II complexed with UTP at 2.3 A resolution
Sequence Clustering and Redundancy Reduction Results
1TWF
Sequence Clusters for the Sequence Entities in PDB 1TWF
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 103 204
95% 1 103 287
90% 1 103 301
70% 1 103 323
50% 1 104 347
40% 1 104 377
30% 1 104 380
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 108 191
95% 2 108 266
90% 2 108 280
70% 2 108 300
50% 2 108 328
40% 2 108 361
30% 2 108 363
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 104 201
95% 1 105 283
90% 1 105 295
70% 1 105 317
50% 1 106 334
40% 1 114 320
30% 1 114 329
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 103 205
95% 1 103 288
90% 1 103 302
70% 1 103 324
50% 1 104 349
40% 1 104 379
30% 1 104 384
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 110 184
95% 3 110 256
90% 3 110 268
70% 3 110 292
50% 3 111 310
40% 3 111 344
30% 3 111 352
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 107 192
95% 2 107 272
90% 2 107 285
70% 2 107 305
50% 2 109 317
40% 2 109 349
30% 2 109 357
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 109 188
95% 2 110 257
90% 2 110 269
70% 2 110 293
50% 2 110 318
40% 2 110 350
30% 2 112 349
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 104 203
95% 1 104 286
90% 1 104 300
70% 1 104 322
50% 1 105 343
40% 1 105 374
30% 1 105 377
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 109 189
95% 2 109 263
90% 2 109 276
70% 2 110 289
50% 2 118 273
40% 2 118 310
30% 2 118 319
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 105 200
95% 1 105 285
90% 1 105 296
70% 1 105 318
50% 1 105 350
40% 1 106 367
30% 1 106 372
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.