Sequence Similarity Clusters for the Entities in PDB 1TWF

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 113 203
95 % 1 113 285
90 % 1 113 299
70 % 1 113 323
50 % 1 123 316
40 % 1 123 342
30 % 1 123 353
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 119 166
95 % 2 119 236
90 % 2 119 245
70 % 2 119 282
50 % 2 119 315
40 % 2 119 341
30 % 2 119 352
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 114 201
95 % 1 115 278
90 % 1 115 291
70 % 1 115 317
50 % 1 125 308
40 % 1 133 294
30 % 1 136 302
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 110 207
95 % 1 110 294
90 % 1 110 309
70 % 1 110 330
50 % 1 111 349
40 % 1 111 380
30 % 1 111 388
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 124 152
95 % 3 124 214
90 % 3 124 226
70 % 3 124 258
50 % 3 125 294
40 % 3 134 293
30 % 3 134 314
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 118 168
95 % 2 118 241
90 % 2 118 251
70 % 2 118 286
50 % 2 129 280
40 % 2 129 308
30 % 2 129 328
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 123 158
95 % 2 124 218
90 % 2 124 229
70 % 2 124 262
50 % 2 124 305
40 % 2 124 326
30 % 2 135 308
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 114 202
95 % 1 114 284
90 % 1 114 298
70 % 1 114 322
50 % 1 115 341
40 % 1 115 368
30 % 1 118 371
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 123 159
95 % 2 123 224
90 % 2 123 235
70 % 2 133 215
50 % 2 141 243
40 % 2 141 268
30 % 2 141 283
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 115 200
95 % 1 115 282
90 % 1 115 295
70 % 1 115 321
50 % 1 115 345
40 % 1 116 364
30 % 1 116 375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.