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RNA polymerase II complexed with UTP at 2.3 A resolution
Sequence Clustering and Redundancy Reduction Results
1TWF
Sequence Clusters for the Sequence Entities in PDB 1TWF
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 101 204
95% 1 101 288
90% 1 101 302
70% 1 101 318
50% 1 102 348
40% 1 102 374
30% 1 102 381
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 106 189
95% 2 106 264
90% 2 106 278
70% 2 106 296
50% 2 106 328
40% 2 106 355
30% 2 106 364
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 102 201
95% 1 103 278
90% 1 103 291
70% 1 103 310
50% 1 104 340
40% 1 112 314
30% 1 112 326
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 101 205
95% 1 101 290
90% 1 101 304
70% 1 101 320
50% 1 102 350
40% 1 102 377
30% 1 102 385
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 108 183
95% 3 108 255
90% 3 108 267
70% 3 108 287
50% 3 109 306
40% 3 109 332
30% 3 109 347
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 105 193
95% 2 105 273
90% 2 105 285
70% 2 105 302
50% 2 107 318
40% 2 107 347
30% 2 107 354
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 107 185
95% 2 108 256
90% 2 108 269
70% 2 108 288
50% 2 108 319
40% 2 108 348
30% 2 110 345
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 102 203
95% 1 102 287
90% 1 102 301
70% 1 102 317
50% 1 103 346
40% 1 103 372
30% 1 103 379
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 107 186
95% 2 107 262
90% 2 107 274
70% 2 108 284
50% 2 116 274
40% 2 116 303
30% 2 116 320
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 103 200
95% 1 103 282
90% 1 103 296
70% 1 103 314
50% 1 103 353
40% 1 104 368
30% 1 104 375
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.