Sequence Similarity Clusters for the Entities in PDB 1TWF

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 114 209
95 % 1 114 295
90 % 1 114 308
70 % 1 114 336
50 % 1 124 331
40 % 1 124 359
30 % 1 124 366
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 123 181
95 % 2 123 253
90 % 2 123 261
70 % 2 123 297
50 % 2 123 325
40 % 2 123 348
30 % 2 123 355
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 115 205
95 % 1 116 286
90 % 1 116 297
70 % 1 116 326
50 % 1 126 328
40 % 1 134 315
30 % 1 137 320
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 111 211
95 % 1 111 303
90 % 1 111 317
70 % 1 111 343
50 % 1 112 388
40 % 1 112 427
30 % 1 112 419
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 128 172
95 % 3 128 236
90 % 3 128 246
70 % 3 128 278
50 % 3 129 308
40 % 3 138 306
30 % 3 138 318
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 122 184
95 % 2 122 256
90 % 2 122 262
70 % 2 122 300
50 % 2 133 300
40 % 2 133 321
30 % 2 133 332
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 127 173
95 % 2 128 237
90 % 2 128 247
70 % 2 128 279
50 % 2 128 314
40 % 2 128 335
30 % 2 139 314
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 115 207
95 % 1 115 294
90 % 1 115 307
70 % 1 115 335
50 % 1 116 364
40 % 1 116 398
30 % 1 119 384
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 127 174
95 % 2 127 240
90 % 2 127 248
70 % 2 137 265
50 % 2 145 260
40 % 2 145 279
30 % 2 145 291
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 116 204
95 % 1 116 291
90 % 1 116 303
70 % 1 116 330
50 % 1 116 369
40 % 1 117 390
30 % 1 117 391

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.