Sequence Similarity Clusters for the Entities in PDB 1TWF

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 115 221
95 % 1 115 308
90 % 1 115 324
70 % 1 115 361
50 % 1 126 369
40 % 1 126 400
30 % 1 126 399
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 133 180
95 % 2 133 242
90 % 2 133 254
70 % 2 133 286
50 % 2 133 322
40 % 2 133 342
30 % 2 133 347
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 116 219
95 % 1 117 297
90 % 1 117 312
70 % 1 117 348
50 % 1 128 353
40 % 1 136 326
30 % 1 139 328
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 112 225
95 % 1 112 313
90 % 1 112 331
70 % 1 112 369
50 % 1 114 417
40 % 1 114 453
30 % 1 114 449
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 138 174
95 % 3 138 231
90 % 3 138 243
70 % 3 138 277
50 % 3 140 304
40 % 3 149 297
30 % 3 149 309
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 132 182
95 % 2 132 245
90 % 2 132 256
70 % 2 132 288
50 % 2 144 296
40 % 2 144 312
30 % 2 144 323
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 137 177
95 % 2 138 232
90 % 2 138 244
70 % 2 138 279
50 % 2 138 311
40 % 2 138 325
30 % 2 150 307
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 116 220
95 % 1 116 307
90 % 1 116 323
70 % 1 116 360
50 % 1 118 407
40 % 1 118 436
30 % 1 121 425
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 137 178
95 % 2 137 234
90 % 2 137 247
70 % 2 148 261
50 % 2 156 255
40 % 2 156 275
30 % 2 156 280
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 117 216
95 % 1 117 300
90 % 1 117 316
70 % 1 117 352
50 % 1 117 413
40 % 1 119 431
30 % 1 119 435

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.