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RNA polymerase II complexed with UTP at 2.3 A resolution
Sequence Clustering and Redundancy Reduction Results
1TWF
Sequence Clusters for the Sequence Entities in PDB 1TWF
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 96 208
95% 1 96 292
90% 1 96 309
70% 1 96 326
50% 1 97 353
40% 1 97 377
30% 1 97 388
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 101 192
95% 2 101 274
90% 2 101 287
70% 2 101 304
50% 2 101 341
40% 2 101 367
30% 2 101 377
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 97 206
95% 1 98 286
90% 1 98 302
70% 1 98 319
50% 1 99 346
40% 1 107 317
30% 1 107 330
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 96 210
95% 1 96 294
90% 1 96 311
70% 1 96 327
50% 1 97 356
40% 1 97 380
30% 1 97 390
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 103 186
95% 3 103 263
90% 3 103 275
70% 3 103 298
50% 3 104 323
40% 3 104 347
30% 3 104 356
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 100 194
95% 2 100 279
90% 2 100 292
70% 2 100 311
50% 2 102 332
40% 2 102 357
30% 2 102 370
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 102 189
95% 2 103 265
90% 2 103 277
70% 2 103 299
50% 2 103 333
40% 2 103 358
30% 2 105 352
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 97 207
95% 1 97 291
90% 1 97 308
70% 1 97 324
50% 1 98 351
40% 1 98 375
30% 1 98 386
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 102 190
95% 2 102 269
90% 2 102 282
70% 2 103 295
50% 2 111 277
40% 2 111 306
30% 2 111 319
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 98 205
95% 1 98 289
90% 1 98 306
70% 1 98 321
50% 1 98 362
40% 1 99 372
30% 1 99 381
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.