Sequence Similarity Clusters for the Entities in PDB 1TWC

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 113 203
95 % 42 113 285
90 % 42 113 298
70 % 42 113 320
50 % 42 123 313
40 % 42 123 340
30 % 42 123 349
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 119 164
95 % 44 119 233
90 % 44 119 243
70 % 44 119 278
50 % 44 119 312
40 % 44 119 339
30 % 44 119 348
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 114 200
95 % 42 115 277
90 % 42 115 290
70 % 42 115 315
50 % 42 125 307
40 % 42 133 292
30 % 42 136 300
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 110 207
95 % 40 110 294
90 % 40 110 307
70 % 40 110 328
50 % 40 111 344
40 % 40 111 378
30 % 40 111 384
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 124 152
95 % 47 124 210
90 % 47 124 222
70 % 47 124 255
50 % 47 125 292
40 % 47 134 291
30 % 47 134 311
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 118 166
95 % 44 118 239
90 % 44 118 250
70 % 44 118 282
50 % 44 129 277
40 % 44 129 304
30 % 44 129 324
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 123 158
95 % 46 124 214
90 % 46 124 225
70 % 46 124 259
50 % 46 124 303
40 % 46 124 325
30 % 46 135 306
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 114 202
95 % 42 114 284
90 % 42 114 297
70 % 42 114 319
50 % 42 115 337
40 % 42 115 364
30 % 42 118 365
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 123 159
95 % 46 123 220
90 % 46 123 233
70 % 46 133 214
50 % 46 141 241
40 % 46 141 267
30 % 46 141 283
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 115 199
95 % 42 115 279
90 % 42 115 292
70 % 42 115 316
50 % 42 115 341
40 % 42 116 359
30 % 42 116 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.