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RNA polymerase II complexed with GTP
Sequence Clustering and Redundancy Reduction Results
1TWC
Sequence Clusters for the Sequence Entities in PDB 1TWC
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 96 203
95% 39 96 287
90% 39 96 300
70% 39 96 316
50% 39 97 338
40% 39 97 361
30% 39 97 374
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 101 186
95% 43 101 267
90% 43 101 278
70% 43 101 295
50% 43 101 327
40% 43 101 351
30% 43 101 362
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 97 201
95% 39 98 279
90% 39 98 292
70% 39 98 309
50% 39 99 331
40% 39 107 301
30% 39 107 319
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 96 205
95% 39 96 288
90% 39 96 301
70% 39 96 318
50% 39 97 341
40% 39 97 363
30% 39 97 376
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 103 175
95% 44 103 249
90% 44 103 260
70% 44 103 286
50% 44 104 301
40% 44 104 328
30% 44 104 339
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 100 188
95% 43 100 271
90% 43 100 282
70% 43 100 301
50% 43 102 316
40% 43 102 339
30% 43 102 350
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 102 179
95% 43 103 250
90% 43 103 262
70% 43 103 287
50% 43 103 317
40% 43 103 340
30% 43 105 336
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 97 202
95% 39 97 286
90% 39 97 299
70% 39 97 315
50% 39 98 335
40% 39 98 358
30% 39 98 371
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 102 181
95% 43 102 259
90% 43 102 269
70% 43 103 279
50% 43 103 311
40% 43 111 294
30% 43 111 311
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 98 200
95% 39 98 282
90% 39 98 295
70% 39 98 311
50% 39 98 347
40% 39 99 356
30% 39 99 367
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.