Sequence Similarity Clusters for the Entities in PDB 1TWC

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 114 216
95 % 42 114 308
90 % 42 114 324
70 % 42 114 360
50 % 42 125 367
40 % 42 125 397
30 % 42 125 400
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 128 182
95 % 44 128 251
90 % 44 128 261
70 % 44 128 293
50 % 44 128 331
40 % 44 128 355
30 % 44 128 365
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 115 214
95 % 42 116 298
90 % 42 116 313
70 % 42 116 350
50 % 42 127 358
40 % 42 135 326
30 % 42 138 328
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 111 220
95 % 40 111 315
90 % 40 111 332
70 % 40 111 371
50 % 40 113 419
40 % 40 113 454
30 % 40 113 449
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 133 174
95 % 47 133 236
90 % 47 133 249
70 % 47 133 282
50 % 47 135 307
40 % 47 144 306
30 % 47 144 320
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 127 183
95 % 44 127 253
90 % 44 127 262
70 % 44 127 295
50 % 44 139 300
40 % 44 139 319
30 % 44 139 327
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 132 176
95 % 46 133 237
90 % 46 133 250
70 % 46 133 283
50 % 46 133 315
40 % 46 133 335
30 % 46 145 318
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 115 215
95 % 42 115 307
90 % 42 115 322
70 % 42 115 358
50 % 42 117 404
40 % 42 117 435
30 % 42 120 427
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 132 177
95 % 46 132 242
90 % 46 132 253
70 % 46 143 266
50 % 46 151 259
40 % 46 151 281
30 % 46 151 289
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 116 213
95 % 42 116 304
90 % 42 116 319
70 % 42 116 355
50 % 42 116 412
40 % 42 118 430
30 % 42 118 433

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.