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An Information Portal to 107620 Biological Macromolecular Structures

RNA polymerase II complexed with ATP
Sequence Clustering and Redundancy Reduction Results
1TWA
Sequence Clusters for the Sequence Entities in PDB 1TWA
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 101 204
95% 43 101 288
90% 43 101 302
70% 43 101 318
50% 43 102 348
40% 43 102 374
30% 43 102 380
Entity #10: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 106 189
95% 47 106 264
90% 47 106 278
70% 47 106 296
50% 47 106 328
40% 47 106 354
30% 47 106 362
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 102 201
95% 43 103 278
90% 43 103 291
70% 43 103 310
50% 43 104 340
40% 43 112 314
30% 43 112 325
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 101 205
95% 43 101 290
90% 43 101 304
70% 43 101 320
50% 43 102 350
40% 43 102 377
30% 43 102 384
Entity #4: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 108 183
95% 48 108 255
90% 48 108 267
70% 48 108 287
50% 48 109 306
40% 48 109 331
30% 48 109 346
Entity #5: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 105 193
95% 47 105 273
90% 47 105 285
70% 47 105 302
50% 47 107 318
40% 47 107 346
30% 47 107 353
Entity #6: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 107 185
95% 47 108 256
90% 47 108 269
70% 47 108 288
50% 47 108 319
40% 47 108 347
30% 47 110 344
Entity #7: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 102 203
95% 43 102 287
90% 43 102 301
70% 43 102 317
50% 43 103 346
40% 43 103 372
30% 43 103 378
Entity #8: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 107 186
95% 47 107 262
90% 47 107 274
70% 47 108 284
50% 47 116 274
40% 47 116 302
30% 47 116 319
Entity #9: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 103 200
95% 43 103 282
90% 43 103 296
70% 43 103 313
50% 43 103 353
40% 43 104 368
30% 43 104 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.