Sequence Similarity Clusters for the Entities in PDB 1TWA

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 113 203
95 % 47 113 285
90 % 47 113 299
70 % 47 113 323
50 % 47 123 315
40 % 47 123 343
30 % 47 123 353
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 119 165
95 % 49 119 235
90 % 49 119 245
70 % 49 119 280
50 % 49 119 314
40 % 49 119 342
30 % 49 119 352
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 114 201
95 % 47 115 278
90 % 47 115 291
70 % 47 115 317
50 % 47 125 308
40 % 47 133 294
30 % 47 136 302
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 110 207
95 % 45 110 294
90 % 45 110 308
70 % 45 110 330
50 % 45 111 349
40 % 45 111 381
30 % 45 111 387
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 124 152
95 % 52 124 214
90 % 52 124 225
70 % 52 124 258
50 % 52 125 294
40 % 52 134 293
30 % 52 134 313
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 118 168
95 % 49 118 240
90 % 49 118 251
70 % 49 118 284
50 % 49 129 280
40 % 49 129 307
30 % 49 129 328
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 123 158
95 % 51 124 218
90 % 51 124 228
70 % 51 124 262
50 % 51 124 305
40 % 51 124 327
30 % 51 135 308
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 114 202
95 % 47 114 284
90 % 47 114 298
70 % 47 114 322
50 % 47 115 340
40 % 47 115 369
30 % 47 118 371
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 123 159
95 % 51 123 224
90 % 51 123 235
70 % 51 133 214
50 % 51 141 242
40 % 51 141 268
30 % 51 141 283
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 115 200
95 % 47 115 282
90 % 47 115 295
70 % 47 115 320
50 % 47 115 344
40 % 47 116 364
30 % 47 116 375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.