Sequence Similarity Clusters for the Entities in PDB 1TWA

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 113 203
95 % 47 113 285
90 % 47 113 299
70 % 47 113 321
50 % 47 123 314
40 % 47 123 342
30 % 47 123 351
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 119 164
95 % 49 119 234
90 % 49 119 244
70 % 49 119 278
50 % 49 119 313
40 % 49 119 341
30 % 49 119 350
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 114 200
95 % 47 115 277
90 % 47 115 290
70 % 47 115 316
50 % 47 125 308
40 % 47 133 292
30 % 47 136 300
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 110 207
95 % 45 110 294
90 % 45 110 308
70 % 45 110 329
50 % 45 111 346
40 % 45 111 379
30 % 45 111 384
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 124 152
95 % 52 124 212
90 % 52 124 224
70 % 52 124 257
50 % 52 125 293
40 % 52 134 291
30 % 52 134 311
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 118 166
95 % 49 118 239
90 % 49 118 250
70 % 49 118 282
50 % 49 129 278
40 % 49 129 305
30 % 49 129 326
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 123 158
95 % 51 124 216
90 % 51 124 227
70 % 51 124 261
50 % 51 124 304
40 % 51 124 326
30 % 51 135 306
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 114 202
95 % 47 114 284
90 % 47 114 298
70 % 47 114 320
50 % 47 115 339
40 % 47 115 365
30 % 47 118 367
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 123 159
95 % 51 123 222
90 % 51 123 234
70 % 51 133 214
50 % 51 141 241
40 % 51 141 267
30 % 51 141 283
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 115 199
95 % 47 115 280
90 % 47 115 293
70 % 47 115 318
50 % 47 115 343
40 % 47 116 361
30 % 47 116 372

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.