Sequence Similarity Clusters for the Entities in PDB 1TWA

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 114 211
95 % 47 114 299
90 % 47 114 313
70 % 47 114 344
50 % 47 124 346
40 % 47 124 378
30 % 47 124 380
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 127 178
95 % 49 127 246
90 % 49 127 254
70 % 49 127 285
50 % 49 127 321
40 % 49 127 346
30 % 49 127 354
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 115 208
95 % 47 116 288
90 % 47 116 300
70 % 47 116 334
50 % 47 126 336
40 % 47 134 322
30 % 47 137 327
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 111 213
95 % 45 111 307
90 % 45 111 322
70 % 45 111 358
50 % 45 112 411
40 % 45 112 447
30 % 45 112 441
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 132 169
95 % 52 132 231
90 % 52 132 242
70 % 52 132 277
50 % 52 133 303
40 % 52 142 302
30 % 52 142 313
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 126 179
95 % 49 126 248
90 % 49 126 256
70 % 49 126 288
50 % 49 137 298
40 % 49 137 316
30 % 49 137 330
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 131 171
95 % 51 132 234
90 % 51 132 245
70 % 51 132 278
50 % 51 132 308
40 % 51 132 332
30 % 51 143 311
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 115 209
95 % 47 115 298
90 % 47 115 311
70 % 47 115 343
50 % 47 116 394
40 % 47 116 427
30 % 47 119 415
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 131 172
95 % 51 131 236
90 % 51 131 246
70 % 51 141 263
50 % 51 149 257
40 % 51 149 279
30 % 51 149 288
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 116 207
95 % 47 116 294
90 % 47 116 307
70 % 47 116 338
50 % 47 116 397
40 % 47 117 419
30 % 47 117 420

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.