Sequence Similarity Clusters for the Entities in PDB 1TWA

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 115 222
95 % 47 115 310
90 % 47 115 326
70 % 47 118 342
50 % 47 129 341
40 % 47 129 368
30 % 47 129 376
Entity #10 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 133 180
95 % 49 133 243
90 % 49 133 255
70 % 49 133 287
50 % 49 136 313
40 % 49 136 328
30 % 49 136 339
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 116 220
95 % 47 117 300
90 % 47 117 315
70 % 47 122 323
50 % 47 131 336
40 % 47 139 317
30 % 47 142 326
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 112 226
95 % 45 112 314
90 % 45 112 333
70 % 45 112 369
50 % 45 114 419
40 % 45 114 455
30 % 45 114 451
Entity #4 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 138 174
95 % 52 138 231
90 % 52 138 243
70 % 52 141 274
50 % 52 143 294
40 % 52 152 295
30 % 52 152 306
Entity #5 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 132 182
95 % 49 132 247
90 % 49 132 258
70 % 49 132 289
50 % 49 147 285
40 % 49 147 303
30 % 49 147 315
Entity #6 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 137 177
95 % 51 138 232
90 % 51 138 244
70 % 51 138 279
50 % 51 141 301
40 % 51 141 315
30 % 51 153 303
Entity #7 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 116 221
95 % 47 116 309
90 % 47 116 325
70 % 47 119 339
50 % 47 121 389
40 % 47 121 416
30 % 47 124 409
Entity #8 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 137 178
95 % 51 137 234
90 % 51 137 247
70 % 51 151 254
50 % 51 159 243
40 % 51 159 267
30 % 51 159 274
Entity #9 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 117 217
95 % 47 117 304
90 % 47 117 320
70 % 47 117 357
50 % 47 120 398
40 % 47 122 411
30 % 47 122 417

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.