Sequence Similarity Clusters for the Entities in PDB 1TTU

Entity #1 | Chains: B
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
lin-12 And Glp-1 transcriptional regulator protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 17253
95 % 3 4 15815 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 3 4 15516
70 % 3 4 14520
50 % 8 12 4110
40 % 8 12 3936
30 % 8 12 3651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BRD 3 A Lin-12 and glp-1 phenotype protein 1, isoform a core domain 6239
2 3BRF 3 A Lin-12 and glp-1 phenotype protein 1, isoform a core domain 6239
3 1TTU 3 A lin-12 And Glp-1 transcriptional regulator conserved core (residues 192-663) 6239
4 2FO1 3 A Lin-12 and glp-1 phenotype protein 1, isoform b CORE (RESIDUES 192-663) 6239