Sequence Similarity Clusters for the Entities in PDB 1TTU

Entity #1 | Chains: B
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
lin-12 And Glp-1 transcriptional regulator protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 20242
95 % 3 4 18483 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 3 4 17995
70 % 3 4 16594
50 % 8 12 4702
40 % 8 12 4442
30 % 8 12 3997

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3BRD 3 A Lin-12 and glp-1 phenotype protein 1, isoform a core domain 6239
2 3BRF 3 A Lin-12 and glp-1 phenotype protein 1, isoform a core domain 6239
3 1TTU 3 A lin-12 And Glp-1 transcriptional regulator conserved core (residues 192-663) 6239
4 2FO1 3 A Lin-12 and glp-1 phenotype protein 1, isoform b CORE (RESIDUES 192-663) 6239