Sequence Similarity Clusters for the Entities in PDB 1TTU

Entity #1 | Chains: B
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
lin-12 And Glp-1 transcriptional regulator protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 19295
95 % 3 4 17610 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 3 4 17181
70 % 3 4 15924
50 % 8 12 4501
40 % 8 12 4252
30 % 8 12 3837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures