Sequence Similarity Clusters for the Entities in PDB 1TL1

Entity #1 | Chains: A
Pol polyprotein, Reverse transcriptase, Chain A protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 61 536
95 % 153 252 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 153 252 97
70 % 153 252 114
50 % 154 253 152
40 % 154 254 165
30 % 154 254 179
Entity #2 | Chains: B
Pol polyprotein, Reverse transcriptase, Chain B protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 57 656
95 % 148 246 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 148 246 120
70 % 148 246 136
50 % 149 248 159
40 % 149 248 176
30 % 149 248 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures