Sequence Similarity Clusters for the Entities in PDB 1TL1

Entity #1 | Chains: A
Pol polyprotein, Reverse transcriptase, Chain A protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 107 254
95 % 157 257 113 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 157 257 118
70 % 157 257 131
50 % 158 258 162
40 % 158 259 172
30 % 158 259 191
Entity #2 | Chains: B
Pol polyprotein, Reverse transcriptase, Chain B protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 82 416
95 % 152 251 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 152 251 122
70 % 152 251 139
50 % 153 253 168
40 % 153 253 182
30 % 153 253 203

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures