Sequence Similarity Clusters for the Entities in PDB 1TKZ

Entity #1 | Chains: A
Pol polyprotein, Reverse transcriptase, Chain A protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 61 548
95 % 113 256 112 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 113 256 117
70 % 113 256 130
50 % 114 257 157
40 % 114 258 168
30 % 114 258 179
Entity #2 | Chains: B
Pol polyprotein, Reverse transcriptase, Chain B protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 57 672
95 % 109 250 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 109 250 122
70 % 109 250 137
50 % 110 252 164
40 % 110 252 175
30 % 110 252 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures