Sequence Similarity Clusters for the Entities in PDB 1TKT

Entity #1 | Chains: A
Pol polyproteins [Reverse transcriptase], Chain A protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 61 526
95 % 68 248 91 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 68 248 96
70 % 68 248 115
50 % 69 249 150
40 % 69 249 165
30 % 69 249 180
Entity #2 | Chains: B
Pol polyproteins [Reverse transcriptase], Chain B protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 57 644
95 % 64 242 116
90 % 64 242 120
70 % 64 242 136
50 % 65 243 157
40 % 65 243 175
30 % 65 243 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.