Sequence Similarity Clusters for the Entities in PDB 1TKT

Entity #1 | Chains: A
Pol polyproteins [Reverse transcriptase], Chain A protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 61 537
95 % 73 255 91 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 73 255 95
70 % 73 255 112
50 % 74 256 151
40 % 74 257 164
30 % 74 257 176
Entity #2 | Chains: B
Pol polyproteins [Reverse transcriptase], Chain B protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 57 662
95 % 69 249 115
90 % 69 249 119
70 % 69 249 134
50 % 70 251 159
40 % 70 251 174
30 % 70 251 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures