Sequence Similarity Clusters for the Entities in PDB 1TJI

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 9146
95 % 5 41 1131
90 % 134 503 3
70 % 463 1617 3
50 % 1153 3934 1
40 % 1154 3935 1
30 % 1284 4663 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 18103
95 % 5 41 1128
90 % 5 41 1148
70 % 560 1909 1
50 % 1154 3934 1
40 % 1155 3935 1
30 % 1285 4663 1
Entity #3 | Chains: P
Envelope Glycoprotein GP41 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.