Sequence Similarity Clusters for the Entities in PDB 1TJI

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 8944
95 % 5 41 1103
90 % 126 476 4
70 % 449 1568 3
50 % 1120 3813 1
40 % 1121 3814 1
30 % 1251 4537 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 17738
95 % 5 41 1100
90 % 5 41 1118
70 % 544 1850 1
50 % 1121 3813 1
40 % 1122 3814 1
30 % 1252 4537 1
Entity #3 | Chains: P
Envelope Glycoprotein GP41 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.