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Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer epitope
Sequence Clustering and Redundancy Reduction Results
1TJI
Sequence Clusters for the Sequence Entities in PDB 1TJI
Entity #1: Chains: L - anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 8272
95% 5 41 1023
90% 110 425 4
70% 406 1434 3
50% 998 3425 1
40% 999 3426 1
30% 1100 4043 1
Entity #2: Chains: H - anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 16436
95% 5 41 1022
90% 5 41 1043
70% 485 1656 1
50% 999 3425 1
40% 1000 3426 1
30% 1101 4043 1
Entity #3: Chains: P - Envelope Glycoprotein GP41 protein, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.