Sequence Similarity Clusters for the Entities in PDB 1TJI

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 9357
95 % 5 41 1152
90 % 165 590 3
70 % 481 1653 3
50 % 1198 4026 1
40 % 1199 4028 1
30 % 1332 4764 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 18483
95 % 5 41 1150
90 % 5 41 1172
70 % 580 1952 1
50 % 1199 4026 1
40 % 1200 4028 1
30 % 1333 4764 1
Entity #3 | Chains: P
Envelope Glycoprotein GP41 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.