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Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer epitope
Sequence Clustering and Redundancy Reduction Results
1TJI
Sequence Clusters for the Sequence Entities in PDB 1TJI
Entity #1: Chains: L - anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 8197
95% 5 41 1014
90% 108 418 4
70% 397 1412 3
50% 972 3355 1
40% 973 3356 1
30% 1074 3971 1
Entity #2: Chains: H - anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 16273
95% 5 41 1013
90% 5 41 1034
70% 472 1622 2
50% 973 3355 1
40% 974 3356 1
30% 1075 3971 1
Entity #3: Chains: P - Envelope Glycoprotein GP41 protein, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.