Sequence Similarity Clusters for the Entities in PDB 1TJH

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 41 1159
95 % 3 41 1396 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 3 41 1417
70 % 734 2593 1
50 % 1512 5263 1
40 % 1773 5933 1
30 % 2168 7388 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11415
95 % 3 41 1397 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 3 41 1418
70 % 728 2550 2
50 % 1513 5263 1
40 % 1774 5933 1
30 % 2169 7388 1
Entity #3 | Chains: P
Envelope glycoprotein GP41 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TJG 2 H FAB 2F5 Heavy Chain 9606
2 1TJH 2 H anti-HIV-1 antibody 2F5 Heavy Chain 9606
3 1TJI 2 H anti-HIV-1 antibody 2F5 Heavy Chain 9606
4 3MOD 3 H ANTI-HIV-1 ANTIBODY 2F5 HEAVY CHAIN 9606
5 3MOA 3 H ANTI-HIV-1 ANTIBODY 2F5 HEAVY CHAIN 9606
6 3LEV 3 H 2F5 ANTIBODY HEAVY CHAIN 9606
7 3MOB 3 H ANTI-HIV-1 ANTIBODY 2F5 HEAVY CHAIN 9606