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Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 11mer epitope
Sequence Clustering and Redundancy Reduction Results
1TJH
Cluster # 16273 Members. Sequence cutoff: 100% Cluster size: 4 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1TJG 2 H FAB 2F5 Heavy Chain 9606  
2 1TJH 2 H anti-HIV-1 antibody 2F5 Heavy Chain 9606  
3 1TJI 2 H anti-HIV-1 antibody 2F5 Heavy Chain 9606  
4 3LEV 3 H 2F5 ANTIBODY HEAVY CHAIN 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1TJH
Entity #1: Chains: L - anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 8197
95% 3 41 1014
90% 104 418 4
70% 385 1412 3
50% 942 3355 1
40% 943 3356 1
30% 1036 3971 1
Entity #2: Chains: H - anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 16273
95% 3 41 1013
90% 3 41 1034
70% 458 1622 2
50% 943 3355 1
40% 944 3356 1
30% 1037 3971 1
Entity #3: Chains: P - Envelope glycoprotein GP41 protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.