Sequence Similarity Clusters for the Entities in PDB 1TJH

Entity #1 | Chains: L
anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10921
95 % 3 41 1331 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 225 788 2
70 % 706 2474 1
50 % 1447 5011 1
40 % 1447 5011 1
30 % 1650 5941 1
Entity #2 | Chains: H
anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21462
95 % 3 41 1328 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 3 41 1353
70 % 698 2424 2
50 % 1448 5011 1
40 % 1448 5011 1
30 % 1651 5941 1
Entity #3 | Chains: P
Envelope glycoprotein GP41 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TJG 2 H FAB 2F5 Heavy Chain 9606
2 1TJH 2 H anti-HIV-1 antibody 2F5 Heavy Chain 9606
3 1TJI 2 H anti-HIV-1 antibody 2F5 Heavy Chain 9606
4 3LEV 3 H 2F5 ANTIBODY HEAVY CHAIN 9606