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Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 11mer epitope
Sequence Clustering and Redundancy Reduction Results
1TJH
Cluster # 949 Members. Sequence cutoff: 95% Cluster size: 41 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3IDG 1 A 2F5 Fab light chain 9606  
2 1TJG 1 L FAB 2F5 Light Chain 9606  
3 1TJH 1 L anti-HIV-1 antibody 2F5 Light Chain 9606  
4 3DRQ 1 A 2F5 Fab' light chain 9606  
5 1TJI 1 L anti-HIV-1 antibody 2F5 Light Chain 9606  
6 3D0V 1 A 2F5 Fab heavy chain 9606  
7 3MOD 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606  
8 2F5B 1 L PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) FAB' 9606  
9 1U8I 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
10 3IDI 1 A 2F5 Fab light chain 9606  
11 1U8H 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
12 2F5A 1 L PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) FAB' 9606  
13 3MOA 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606  
14 2PR4 1 L nmAb 2F5 Fab' Heavy Chain 9606  
15 1U95 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
16 1U8K 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
17 3IDN 1 A 2F5 Fab light chain 9606  
18 1U92 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
19 1U91 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
20 1U8Q 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
21 3IDJ 1 A 2F5 Fab light chain 9606  
22 3IDM 1 A 2F5 Fab light chain 9606  
23 1U8J 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
24 3D0L 1 A 2F5 heavy chain 9606  
25 2P8L 1 A nmAb 2F5, light chain 9606  
26 1U8M 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
27 3LEV 2 L 2F5 ANTIBODY LIGHT CHAIN 9606  
28 3MOB 2 L ANTI-HIV-1 ANTIBODY 2F5 LIGHT CHAIN 9606  
29 1U8N 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
30 1U93 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
31 2PW2 1 A 2F5 Fab' heavy chain 9606  
32 2PW1 1 A 2F5 Fab fragment heavy chain 9606  
33 1U8L 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
34 2P8M 1 A nmAb 2F5, light chain 9606  
35 2P8P 1 A nmAb 2F5, light chain 9606  
36 1U8O 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
37 3DRT 1 A 2F5 Fab' light chain 9606  
38 1U8P 1 A ANTIBODY 2F5 (LIGHT CHAIN) 9606  
39 3BQU 1 A 2F5 Fab' light chain 9606  
40 3EGS 1 A 2F5 Fab' light chain 9606  
41 3DRO 1 A 2F5 Fab light chain 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1TJH
Entity #1: Chains: L - anti-HIV-1 antibody 2F5 Light Chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 7707
95% 3 41 949
90% 97 370 5
70% 360 1303 3
50% 881 3106 1
40% 882 3107 1
30% 969 3679 1
Entity #2: Chains: H - anti-HIV-1 antibody 2F5 Heavy Chain protein, length: 237 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 15405
95% 3 41 947
90% 3 41 969
70% 428 1498 2
50% 882 3106 1
40% 883 3107 1
30% 970 3679 1
Entity #3: Chains: P - Envelope glycoprotein GP41 protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.